LOC122332138 (ighv5-5,ighm,ighv5-4,ighv5-8)


Basic Information

Item Value
gene id LOC122332138
gene name ighv5-5,ighm,ighv5-4,ighv5-8
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13080070 ~ 13080621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_281
TCTCAAACCATGAACTCCTTGTCTCTCtggttgttgttgctgctggcaGCTGTTCCTCGTGTCCACTGTGTTGAACTGACCCAGACTGATTCTCTTGTCTTAAGTCCTGGTCAGGTTTTGACTCTATCCTGTACAATCTCTGGATATTCAGTGACTGACAGAAACTACTGCAGTGGTTTCATTCGGCAGCCTGCAGGAAAAGCTCTTGAATGGGTTGGAGAGATATGTGGTAGCGGTAACACATATTACAGTGATAAACTGAAAAGTAGATTTCAAGTTACCAGAGACTCTTCCAGAAACACAGTGACTCTTCAAGGACAGAAAATGCAGACTGAGGACACAGCTGTGTATTACTGTGCCAGAGAGTCACAGTGACACAGAGCAGATACTCTCTTGATCAAAAACCAGATTACCACTCAGCACACAATACACAGCTTTG

Function

symbol description
ighm Acts upstream of or within response to lipopolysaccharide. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; gill; heart; immune system; and integument. Human ortholog(s) of this gene implicated in agammaglobulinemia. Orthologous to human IGHM (immunoglobulin heavy constant mu).
ighv5-8 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.
ighv5-5 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.
ighv5-4 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

NR:

description
immunoglobulin mu heavy chain, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_281 True 439 V_gene_segment 0.51 2 13080070 13080621

Neighbor

gene id symbol gene type direction distance location
LOC122332129 NA coding downstream 29209 13050286 ~ 13050861 (-)
LOC122331939 NA coding downstream 87741 12987350 ~ 12992329 (-)
LOC122331923 NA coding downstream 92866 12981087 ~ 12987204 (-)
LOC122332086 gtf2f1,LOC107737737 coding downstream 99977 12974708 ~ 12980093 (-)
LOC122329559 LOC107582973,LOC107723206,LOC107554143,LOC107695115,LOC107689629,LOC107737739,LOC796777,LOC108436680 coding downstream 418222 12571028 ~ 12661848 (-)
LOC122332149 NA coding upstream 2588 13083209 ~ 13083734 (-)
LOC122341303 NA coding upstream 3405 13084026 ~ 13084966 (-)
LOC122332140 ighm,ighv5-5,ighv5-4,ighv5-8 coding upstream 5754 13086375 ~ 13087267 (-)
LOC122341304 LOC107710248 coding upstream 11589 13092210 ~ 13092846 (-)
LOC122341774 NA coding upstream 16508 13097129 ~ 13100644 (-)
LOC122332187 NA non-coding downstream 7242 13072560 ~ 13072828 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding downstream 177160 12900781 ~ 12902910 (-)
G19677 LOC107737766 non-coding downstream 193116 12864310 ~ 12886954 (-)
LOC122332655 NA non-coding downstream 784647 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 809134 12265845 ~ 12270936 (-)
G19703 ighv6-1 non-coding upstream 10050 13090671 ~ 13091152 (-)
G19726 NA non-coding upstream 44900 13125521 ~ 13129608 (-)
G19811 NA non-coding upstream 276958 13357579 ~ 13357789 (-)
G19872 NA non-coding upstream 552938 13633559 ~ 13633785 (-)
G19947 NA non-coding upstream 817010 13897631 ~ 13898932 (-)
G19676 LOC107690708 other downstream 11880 13005996 ~ 13068190 (-)
G19700 NA other downstream 32576 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 316980 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 400270 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 736198 12339187 ~ 12343872 (-)
gng13b NA other upstream 705388 13786009 ~ 13792602 (-)
G19933 NA other upstream 724747 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 1122309 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 1354526 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 2040185 15120806 ~ 15179359 (-)

Expression


Co-expression Network