LOC122332140 (ighm,ighv5-5,ighv5-4,ighv5-8)


Basic Information

Item Value
gene id LOC122332140
gene name ighm,ighv5-5,ighv5-4,ighv5-8
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13086375 ~ 13087267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_283
TCAAACCATGAACTCCTCGTCTCTCtggttgttgctgctgctggcAGCTGTTCCTCGTGTCCACTGTGTTGAACTGACCCAGACTGATTCTCTTGTCTTAAGTCCTGGTCAGGTTTTGACTCTGTCCTGTACAATCTCTGGATATTCAGTGACTGACAGCAGCTACTGCACTCACTTCATTCGGCAGCCTGCAGGAAAAGCTCTGGAATGGGTTGGAGAGATATGTGGTAGCGGTGACACATATTACAGTGATAAACTGAAAAGTAGATTTCAAGTTACCAGAGACTCTTCCAGAAACACAGTGACTCTTCAAGGACAGAAAATGCAGACTGAGGACACAGCTGTGTATTACTGTGCCAGAGAGTCACAGTGACACAGAGCAGATACTCTCTTGATCAAAAACCACACACTTACTTTATAAAAACCGTACCATATTGCTTTCGAGTTATGtcattctttttcattatttcatgaTAGTGAAGtctatttttattgctttaaaatcttTCAGACAGTCTATATTATGAACACCATCATTattgtgctgtttatttattgatttattcttATGAAGTTCATGACTGTCATTGTGCTGTGCATAAAAGTAAGTCTTTCTTATCCAAACAAGGTCATCCAAAAAAGAAAGGCTTAATGTGCACGTATACATTGACTagacaagagagaaaaaaacactgagcaCACAGGGAAAGAAAACCCAACAGAACGTCCATGATAAATGAGTAAATTACTGAAATCACATCGGATTAAAGGTTAAA

Function

symbol description
ighm Acts upstream of or within response to lipopolysaccharide. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; gill; heart; immune system; and integument. Human ortholog(s) of this gene implicated in agammaglobulinemia. Orthologous to human IGHM (immunoglobulin heavy constant mu).
ighv5-8 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.
ighv5-5 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.
ighv5-4 Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane.

NR:

description
immunoglobulin heavy chain

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_283 True 776 V_gene_segment 0.53 2 13086375 13087267

Neighbor

gene id symbol gene type direction distance location
LOC122341303 NA coding downstream 1409 13084026 ~ 13084966 (-)
LOC122332149 NA coding downstream 2641 13083209 ~ 13083734 (-)
LOC122332129 NA coding downstream 35514 13050286 ~ 13050861 (-)
LOC122331939 NA coding downstream 94046 12987350 ~ 12992329 (-)
LOC122331923 NA coding downstream 99171 12981087 ~ 12987204 (-)
LOC122341304 LOC107710248 coding upstream 4943 13092210 ~ 13092846 (-)
LOC122341774 NA coding upstream 9862 13097129 ~ 13100644 (-)
LOC122341259 clpp,LOC107753176,LOC107590418,LOC107689627,LOC107724426,LOC107698620,LOC107601229 coding upstream 20564 13107831 ~ 13111379 (-)
yipf2 yipf2,LOC107698640,LOC107601236,LOC107689625,LOC107724423 coding upstream 43669 13130936 ~ 13134638 (-)
tnrc6c1 LOC107724432,LOC107590414,LOC107601217,LOC107698663 coding upstream 86084 13173351 ~ 13227138 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding downstream 5754 13080070 ~ 13080621 (-)
LOC122332187 NA non-coding downstream 13547 13072560 ~ 13072828 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding downstream 183465 12900781 ~ 12902910 (-)
G19677 LOC107737766 non-coding downstream 199421 12864310 ~ 12886954 (-)
LOC122332655 NA non-coding downstream 790952 12294140 ~ 12295423 (-)
G19703 ighv6-1 non-coding upstream 3404 13090671 ~ 13091152 (-)
G19726 NA non-coding upstream 38254 13125521 ~ 13129608 (-)
G19811 NA non-coding upstream 270312 13357579 ~ 13357789 (-)
G19872 NA non-coding upstream 546292 13633559 ~ 13633785 (-)
G19947 NA non-coding upstream 810364 13897631 ~ 13898932 (-)
G19676 LOC107690708 other downstream 18185 13005996 ~ 13068190 (-)
G19700 NA other downstream 38881 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 323285 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 406575 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 742503 12339187 ~ 12343872 (-)
gng13b NA other upstream 698742 13786009 ~ 13792602 (-)
G19933 NA other upstream 718101 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 1115663 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 1347880 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 2033539 15120806 ~ 15179359 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000288_00050351_00060483 IGHV5-5 misc CI01000288 null 49830 ~ 60786 (+)
rainbow trout (Oncorhynchus mykiss) G1186216 NA unknown NC_048577.1 CM023231.2 52010690 ~ 52011211 (-)
striped catfish (Pangasianodon hypophthalmus) LOC117598909 NA misc NC_047607.1 CM018553.1 21962438 ~ 21963007 (-)
mexican tetra (Astyanax mexicanus) LOC103032846 NA misc NW_019172441.1 APWO02002039.1 159300 ~ 160048 (+)