G18929


Basic Information

Item Value
gene id G18929
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10437326 ~ 10440371 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21256
TGTAAGGCCAAAACAAAATAATTTATTTTCTTTTTGTGACATTTTATGCAGACAGCTAGAATTTAGTGTCTCACTTCAATCCATTGTTATATAATTCTTCCCTTTGCCACACCAACCCCTAAATCAATTAACAGTAATAACCCAAACATTAAAGAGAAATTTGCTATTTTCTGTAGATTTTTGCAAGCCTGTCAACATCAATATCATTACCATATGCTCCTAGTATAATTTCACATTACATAACAATAAGATTTTTTTTTTAAACAAGTTAGTGCATTTCATTATCCTAAACCACTAGCTGCTCATATTCATTAATGAAAATAAGAAAAAAAAAAAAGCCCCAGTGATTTGTTATTTACCGCATTACTAAGCCTCTAGTAAATGCATCAAGTATTTTCTCTGCAGAAATCTCCAAAAAAAAAATTATTATACAAATATGTTAAATGTGACTCTCTCCCAATGTTTTTTTGTACATATTCATGATAACAAACTTACAAGGGACAAAGGGGTTGCATGGGGGATGGACAGCAGAATTAAAATAAATTAAAAATCAATTTTTAAAAGCAATACTTTACAATGAATTGAACAGCAATACTGTATCCTCCTGATTAAACGTTCAAATAACAGCACCAATTCACCACAGCACTTTTTTTTGTAGTGAACGCATCCCTGCTATTCATAATCCCAACTTAGTCACTATCAGGTACCATCTACCAAAGCAACTGTCAATTTCTAATTACCCAAACACACGCCGCCCCATCAAAAAGAACACGCTGACACTGGCATAGCAATGACGACAGTCACGTTACAATAGCAAAGCTATAAGAAACCTTGCAGCAATCATTAAGAGAGGATTTTGCACAGATATTGCCATTTATCAAACAGTCAGAATGCTCTGTTTAGGGAAGAAATGTAGTTGTTTAAATAAGGGGTGTGTATAACAATTCATAGAGGACACATTCAGGTCATACCAAGCATCTAACATTCAATTCTCCTTTAAATTTCATCTTCTTGAAACTATAAAACGGCATGAAACGACCGAATTGGAAGTTCATATAAATGTGAGACCAGAAATAAATTTAAGTGACAGGAATGAGATGAGACATGTCACCCCTGAGCCAGATAACCCACTCTGGGCATTAAATTCGCACATAAATCATCATAAAAATGATTCCAAAAGAGACCAGTACTGCGGATTTGGTTTCTGAATGACCAATAGGTGATAAACTCCGGATTTCTTTCACTGAAACACAAGGAGGTGATGGTGATAAATGTGCCTTAAGAAACTTTGATATAACAGTGGTAACCATAATTTATCATCATCTCAACAGTAATGGATAGAAACTAACTTCAGACCTGCTTGACCTGTATCATCATTATGACCAACAGCTCCATCCAATTAATCAACTCTGAATATACTGATTATGAAAACAGGAAACCCTCTAAATCAGAAACGATCCACTTAAATGATCATGATTCTCGACTCCGTCTTGCATTAACCCAAACCACTATCATTCTGTTGTAAACATAGCCTGACTGATAATCAGGATATCTGAGCATGCTCAAAGCAGTCCAGGAAGAAGAATGCACAAAAACAAAATGGACAAATCTGAGATGACACAAAGTTCATGAGTTCAATGTACCCAACTGTTAAAGTTATCATTCACAGGCTGTTGGTTACTCAAACTAACCACAAAAACAATGACAAATCACACATAACATTAAAAAAAAAATCACGAGCTACAGTATGTCAAGCAAACTAACGCAAAACTCCAGACCAAATCGCACTGTCAGCCCTAAAGATACTTGCGAAATAATCCACTCTCAAGCACGCGCCACATATTCTACACGGGATCTAGTTCCCAGATGAATCGACTCTAAAGCAAACCACATCCTTCCAAAGAAATGTTCATTTACACGGTCAAACTACCCCAGGGGTCGAACGCCCAGTGTCCTGTGATTGCAAATGAAGCAACCGAAAACGAAAGAAAAGAAAAAGATGAATCATTGCATGTCAAAGTGAGATCTTTGTATAGGTACATGACATCGTTTATGCATGTTCCTTTTCTTAGTGCATATGCTCTTTGCAGACCACCATCAGGGCCATCAGACCGCCCACTTTCACACCTCTCGAGCAGGGCTGCGAGAGGCCACCCTCGTTTCAAGAAGAAAAAAAAAAAAAATTCACATGGATTTACATTCTGAAGGGACATTGTCAAGTTAGAAGCATAAAATGTTTTTTTTTTCCTATTTGATGGCGTCCTTCAGCAAGCAACAACTGCTTCCAATTTCTGATGCCCATTTTTGCCTGGATACCCCAGTCTGTGCATTGTCACTTCTTGAGACTTTTTCCTCTGGAAGTGCTCCAGGCAGGAGAGGTGAATACCATTTTAAATTTTGACTTTTATATCATATTTCATCTCTTTATATATATTTATATATGTATTTACATATATATCTCATATATATGTGTGTGTAAATATTCATACATTAAGGATTTCTGTTCAGAGTCTTTACTTTGGCGATATGGGGGGGATGTTCTGCTCTTTTCCAGTGTGTCTGGAACCTCCTTGGGGGGAACCACGATGGCCAAAGGGAGGGCGTCTCTGCTGCTCTCGTAGCTTGAATCCCCCCGTATTGGTTCTGGGGGGTCCGTTGCTGCGAGAAAAGCCCTGGGAGTCACGGGCCGGCCGGCCCTCCCTGGCCTTGCAGTTGCCCCCCGTTTCCTGAGGCCGATCCTGTTTGTTTGCAGGGCTGGAGGGCTGCTCCTCCACCTTGTTGACACGCAGCTCTCTCAGAGGCTGTGCACTTGCATTGTTGGGGCTGGAAGTGGATGCTGGAGGAGGGGGATCCTTCGGTGGTCGCTGACACACTTCAGCG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108273545

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21256 True 2880 lncRNA 0.36 3 10437326 10440371

Neighbor

gene id symbol gene type direction distance location
CI01000001_10420931_10426716 NA coding upstream 10179 10420318 ~ 10427147 (+)
CI01000001_10395420_10396473 NA coding upstream 40853 10394851 ~ 10396705 (+)
CI01000001_10328133_10329110 NA coding upstream 108216 10328040 ~ 10329110 (+)
CI01000001_10321783_10325266 NA coding upstream 112021 10321647 ~ 10325305 (+)
CI01000001_10150798_10152858 MIPA coding upstream 284388 10150373 ~ 10152938 (+)
CI01000001_10525795_10530510 WNT1 coding downstream 82891 10523262 ~ 10530543 (+)
CI01000001_10538498_10539667 RPS26 coding downstream 98017 10538388 ~ 10539846 (+)
CI01000001_10573770_10582123 LMBR1L coding downstream 133399 10573770 ~ 10582238 (+)
CI01000001_10582439_10582802 NA coding downstream 142007 10582378 ~ 10582821 (+)
CI01000001_10590766_10595793 DHH coding downstream 150065 10590436 ~ 10596238 (+)
G18969 NA non-coding upstream 453 10436653 ~ 10436873 (+)
G18968 NA non-coding upstream 1331 10435770 ~ 10435995 (+)
G18967 NA non-coding upstream 2784 10434219 ~ 10434542 (+)
G18951 NA non-coding upstream 3566 10431957 ~ 10433760 (+)
G18882 NA non-coding upstream 33416 10402230 ~ 10403910 (+)
G18933 NA non-coding downstream 44777 10485148 ~ 10487561 (+)
G19011 NA non-coding downstream 58262 10498633 ~ 10500815 (+)
G19026 NA non-coding downstream 97431 10537802 ~ 10538016 (+)
G19029 NA non-coding downstream 112973 10553344 ~ 10553661 (+)
G19030 NA non-coding downstream 113318 10553689 ~ 10553969 (+)
G18872 NA other upstream 155957 10271146 ~ 10281369 (+)
G18873 NA other upstream 176612 10223879 ~ 10260714 (+)
G18896 NA other upstream 195834 10239900 ~ 10241492 (+)
CI01000001_09435836_09436037 NA other upstream 999263 9435836 ~ 9436373 (+)
G18937 NA other downstream 34613 10474984 ~ 10476389 (+)
G19039 NA other downstream 410553 10850924 ~ 10853983 (+)
G19314 NA other downstream 1060823 11501194 ~ 11558673 (+)
G19395 NA other downstream 1240951 11681322 ~ 11681817 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021731 NA non-coding NC_007134.7 CM002907.2 27508867 ~ 27516273 (+)
grasscarp (Ctenopharyngodon idella) G206324 NA non-coding CI01000049 null 2077924 ~ 2078240 (+)
mexican tetra (Astyanax mexicanus) G129581 NA non-coding NC_035911.1 CM008314.1 5427352 ~ 5461752 (-)