G18998


Basic Information

Item Value
gene id G18998
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10655387 ~ 10657271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21333
GGACAAGTTAAAATCCAAATTAATAAATATAATATCCAGATCATGGAAGAAATTGCCTCTTAAAAATCATATGTCCTTTTCACATATATTCATTATCAGAGAATGTTATATATATATATAGGTCTGATGTGTATGAAAGCAGTGACAGATTTGCAGGTCATGTCTTTGTAGTGGACCAGCAGGTGGTGTTCTCTATTCTCCAGAGTCTCAGCATCAATATGACTCTGGAGCCAAAGTTACCTTTGTGAGTAGGACCCACATTGTGTGACATGTGTGATCCAAAGGAGCTTACAGAACCCCTGTGAGCAGCATTCAGGACTCCCACGAAAACAACAGTATGGGTTAAGCTTTAGAGACCTCAGACCCTCAATAAAAAATCCCTGATTACATAAAAAAAAATAACATTGACAAAGTCCTTGACTTCATCTAGTATGAAAAAGGAAACTGTGTCTTAAGGAAAAGAAGTCAAACATATTCCTATAGGAGCGCTCTTGCTTCTGCCAGGACCTCAGGATGTTTACTTCCTCTAAATAGCAGGGCAGATGGAAACTTGTGATTTTAATTTTGAGGAATAAAGAGACATTTGATGCGCTCACTATTTGTCCTCTTAATGGCCACATGACACGAGGAGAGTCTCGGTTAGTGCATTAAGCCGTATGGGTACATAAAGAATGATGTACAAGATCTAATCTAATTACACTGAAATTCCTTTCAAGTTACTCTCAATGCAAAGGTCAAATACAAAGCATTTAGAGTTGCGGTCTGCAGACTTAAACCTCTATTGTTACCATTAACCTCTTTGTTTTTGCTAGACTACATAGTAATCTGGCCCCTGACTGTCTATTGTCTATAAAGTGGGGTCATATCACTCAATTACCATTCGACATATTTCAGCTGGGCGTTTATATCCGATTATTCCAAACAATGACATCGGGAATGGGTCCATTCTGTGTAAAAATGTCACAGCTGATAGAAGGGCACCATTTCAGAGGAGTCTGGCCTACCAGAGCAGGGCATTGATACTCCACTCAGCCGCTGTGCTCTGTTAAAAATAACCCTCTCTCCATCTGACCGGACAGGCAGAGTTGGGGAATTATCTCCGGCAAAGCCCCCTCTCTGTGCTCCTCCACAGATGGATATAGCAAGGGCGCTGATATAGATAAACAGGCAGACAGAAATCAATGCCCATCCTCTCACACCGCCATACAGTCTGACAGCAAGACAAACACAGGGAAACTTTGGCTTGGGGAAAAAAACGAGATAAACATCTTATAAATATCCATCAATCAGTGGAGCATCTGCTCTTTTGGCCTTCTCTGCGTGTTGGTGTGCGTAGGAAGGGATTTATACTGGAAAGACACCCATTTGGCAGTCTCATTTCTATGAATAAGATACGTGATATATCTATTTGCGACGGGTAAATATAGGTCTGTCTGAAACATGATCGTGAAGGATGCATTCAGTATTGTATCCGTGAAATGTTGTTCAACAACACCGAGGTGTGTCTTGGTAGCTCCAGAGGGGTATCAGGTCCTATAGTGTCTCTTGTGCCGAACAACGATTCTAACAATTGCGAGATTGCATGGCTTGTAAGACAGGATACACATTGTTTATGGTTTACAAGAATTGGATTGAGGCAAAAGGAAATAGATCCCTTATATCTCCTTTAGGACTACTGAAGTAACATTGTATTCATTAACCAGATCAGGTTGTGGCACAGTTTACTCAGATCAGTCTATGGGAAAAACAAAGAGGCAAAAAGAACCTAATGTTACACTTTCAGAGCCATTAATGATGCCCTCTAGTGGATAAAAGTTTTACTACTACATGTTAATGCTCAAAAACACATTTAAAATGATAGTTCACCCAAAAATGAAAATTTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21333 True 1885 lncRNA 0.40 1 10655387 10657271

Neighbor

gene id symbol gene type direction distance location
CI01000001_10604980_10633286 KMT2D coding upstream 21847 10603888 ~ 10633540 (+)
CI01000001_10590766_10595793 DHH coding upstream 59149 10590436 ~ 10596238 (+)
CI01000001_10582439_10582802 NA coding upstream 72566 10582378 ~ 10582821 (+)
CI01000001_10573770_10582123 LMBR1L coding upstream 73149 10573770 ~ 10582238 (+)
CI01000001_10538498_10539667 RPS26 coding upstream 115685 10538388 ~ 10539846 (+)
CI01000001_10688354_10691353 NA coding downstream 30591 10687862 ~ 10691409 (+)
CI01000001_10694664_10713151 NA coding downstream 37196 10694467 ~ 10714684 (+)
CI01000001_10715529_10716091 NA coding downstream 57843 10715114 ~ 10716910 (+)
CI01000001_10749174_10779222 ARHGEF25A coding downstream 91903 10749174 ~ 10779454 (+)
CI01000001_10807407_10818870 SLC26A10 coding downstream 150049 10807320 ~ 10820053 (+)
G19041 NA non-coding upstream 465 10654569 ~ 10654922 (+)
G18997 NA non-coding upstream 56136 10599026 ~ 10599251 (+)
G19008 NA non-coding upstream 56573 10598604 ~ 10598814 (+)
G19009 NA non-coding upstream 69093 10585956 ~ 10586294 (+)
G19030 NA non-coding upstream 101418 10553689 ~ 10553969 (+)
G19080 NA non-coding downstream 157119 10814390 ~ 10815702 (+)
G19087 NA non-coding downstream 216711 10873982 ~ 10874233 (+)
G19088 NA non-coding downstream 217399 10874670 ~ 10874871 (+)
G19034 NA non-coding downstream 235166 10892437 ~ 10896905 (+)
G19130 NA non-coding downstream 268257 10925528 ~ 10986466 (+)
G18937 NA other upstream 178998 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 258682 10394851 ~ 10396705 (+)
G18872 NA other upstream 374018 10271146 ~ 10281369 (+)
G18873 NA other upstream 394673 10223879 ~ 10260714 (+)
G19039 NA other downstream 193653 10850924 ~ 10853983 (+)
G19314 NA other downstream 843923 11501194 ~ 11558673 (+)
G19395 NA other downstream 1024051 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2856133 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G173112 NA non-coding NC_053128.1 CM020925.1 5462651 ~ 5465246 (-)
tiger barb (Puntius tetrazona) G158282 NA non-coding NC_056721.1 CM032090.1 16101625 ~ 16102214 (-)