G19039


Basic Information

Item Value
gene id G19039
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10850924 ~ 10853983 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21382
AGCTAAAGCTAGGCCAGTCACTCACTGTCAAACAGTTTCAGAGACTTTTAGGTCTGATGGCAGCTGCGTCCAACGTGATAATTTTGGCCTGCTGTACATGAGACCTTTGCAGTGGTGGCTCAAGACCAAGGGTTTTTCCCTAAGGGGAAATCCACTCCGCATGATCAGGGGGGTCTGCGGTCGAGCCCCTTATACAAGCTGGCTCACCAGATCTTCCTGTGGGCACAAGGGAAGCTGCTCTCTCTGAGGGCAGTTTACATCCTGGGGTATTTAAATCAGGGGGCAGACATCCTGTTGAGGCAGGGGTCGAGGCACGGAGAATGGAGACTACACCCCGAGGTGGTGGAGCTCCTGTGGAGAAAATTCAGCCGAGTGGAAGTAGATCAGATGTGACCTCCATAGTGTGTGAGAACCAATGTGGACAGTGTGTTGTCGCTAGAGGTTTGCTTCTCTAGCAACAACACACTGTCCACTTTGGTTCTCACACACTATGGTTCAGATGCGGCCAAGGTCACATCTGTACACCTTTCCTCCGATCGCTCTGCTCCTGGGAGTTCTGGAGAGAGTTTGGGGTTTAATTCTAGTTCTAATAGCCCCGTACTAGCCGGCCCGAGTATGGTTTTTGGACCTTGTGTCCCTCCTCTGGAGATTCCAATCAGGAGGGACCTTCTCTCTCAGTCGAAGGGGTTGTGGAAACTATGGGCTTGGCCTCTGAGGGGGCCCAGCTCATAAGCTCAGGTCTCTCAACTGAGATTGTTGAGACCATTTTAAGCAGAGAATGAGCAAGTGGGTGGACGAGGCCATCTCACTTGCTTATGAGTCGGCTGGTCAGCCTTCACCTTTGGCTGTACGGGCCCACCCAGGAGTATGGCTGCTTCTAAAGCATTACTGTCAGGAGTTTCTCTCCAAGATGTTGGTGATGGTCCTTGCTGCACACGTTTGTGAGGTTTTATGATCTTGACCTCGGCTTCACTCCAAGGGCGCAGGTGCTCTCATCTTAGTGTGCGCATACGATTTCACATGAACAGGCACGTGCTCGTACGGCAGCGTGGGTATAGCGTTCCGACGCAGCGCGAGTTCCCTTGAAAGGGAACATCTTAGTTACGTATGTAACCATGGTTCCCTGAAAAGGGAACGATACGCTGCGTCACCCTGCCAATTCCCAACTCGTGTTCGCTCGACACCATGCTCCAAGCAGTTTCCCCCAGAACCATCCAATTCTACGTGACAGCATGGAGATGTTTCAAAGCATTCCTCTTCACATATAACATCCGATCAAAGGGATTCAACGATCCCTGCCTACCCGCCCAGACACCAGACAACCCATAACGCTACACAAACTCACAAAATGTATTCATACCCTTTGCACGGGTTATCAACCCCTCAATACCGCCCGCTCACTCGACACAATGTTTATTTTAGCCTTTTTCAGTTTTCTCAGATGCTCGGAATTCACGATCACCTTCAAATTCAACCCGAAAGTCCACCCCACCATTTCAGACATCTCAAACTTGATCAAACAAAGCAAAACAGACCAACCTTTATCTATATTTTCAACCTCTCGTCTCCAGTCCAACCATACCAAACTGTTCTTGCGTACTTCCAGTTTAGAAACTCCCAGGCTCCTTTTGATCGTCTTTTCATAGATGCCTCCAACAAACCTGTTGCACGCTTCTGGTTCCAAAAGCATCTCAAATCCGTTCTCCAGCAATCAGGCATCTCAGTGCAAAATTTTTCTAGTCACTCTTTCCGTATCAGGGCAGCAACATCAGCAGCCCAAAAAGGCCTCTCCCAGCAGCAGATCCAAGCTCTCGGAAGATGATCTTCAGACACTTTCCAAAGCTACATCAAGACCAACTGGTTCCACATGAAAAATAAAGAAAATCTTTCTCTTCGACTGCTGGCGAGGTTTATCCTTCTGATGCTGCGAGTCTTTATCTCCCATTGGATGCTGCGAGAGCCCTCCTGGTCAGTATCCACCTGTTCTCTTTCTCTGTCCGGCGAGTCTTACCCATCCGATGCCGTGAGTCTTGATCTCCCGTTGGACGCCGCGATAAATCTCCTGGCCAGGCAATAGATCGCCAGATCTCTATTTGTCAGGAATTGTAAGGGATCATATGGATTTCTTTCTGTTCAGGGTGGGTTTGTTACATGTTTTAGTGCTGTCTCCTAGTTTTTATGGTTTTTATGGATTAATTTGCACACCTGTTATTCGTTTCATTGATTTGGTTTGTTTGTTCTTGCTTCTTTCAGTTCATTGTCAATTCTCATCATTATTATGTTCGGTTGTTCTGTTTCCCTGAGTGTTTTGGTTTGAGTTTTTTCACTAGATTTGATATTGCAACATTTAGATCCTGCTCAACTGTAAATAAATTCACAAAAATGAAATGCAAATTTATCTACATTTTGTAGTAAGATTTATTAAAACGTAAATAGCCAAAACACGGAATTGCAAGAAAAAAGTCAGAATTGCATGATATAAACTCACAACTGTAAGGAAAAAAGTCAGAATTGTGACCCTATCCAAAGCTACATATTTGGAATTCAGATATGGAACATATGGAAACATAATCAGGTATTCTCAGAACCCATAGGTTAATCATAATGACTGTATTCCACAGCCTGTTTGAAACTTTGCCCTCAGGCGGATGTTACAGATCTCTGTGCACTAGAGCATATAGGCATAAAAACAGTTCCCCAGGCTGTCTCCAACTTAAATAGCTTGAACACAATTGCACCCTTTTTTTTTATATATGATTAATAATTCAGTACTCTTAAGGTGTTTATCCCATCTGAATAAATAGATCCTTACTATGTAAATATAAATGTTTGTATATATAGTTGTATATACACATAATGCACACATCTGTTCATAAGTCTTCTGATCTAGATGTATAGTACTTTATTTTTAATTTCTTCTCATTTATTTCTATTTCTTATGTTCTTACTATCCTCTTGTGTTATATATGTGTGGATGGATAGATGGGTGTACCCAGAGCTGTGTTTGCGAACACTTGGTAAATAAAGCTCATTCTGATTCACAACACTGCACCAGGAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21382 True 3060 TUCP 0.44 1 10850924 10853983

Neighbor

gene id symbol gene type direction distance location
CI01000001_10807407_10818870 SLC26A10 coding upstream 30871 10807320 ~ 10820053 (+)
CI01000001_10749174_10779222 ARHGEF25A coding upstream 71470 10749174 ~ 10779454 (+)
CI01000001_10715529_10716091 NA coding upstream 134014 10715114 ~ 10716910 (+)
CI01000001_10694664_10713151 NA coding upstream 136240 10694467 ~ 10714684 (+)
CI01000001_10688354_10691353 NA coding upstream 159515 10687862 ~ 10691409 (+)
CI01000001_10856786_10861403 C1GALT1A coding downstream 1977 10855960 ~ 10862138 (+)
CI01000001_10968536_10981345 NA coding downstream 114361 10968344 ~ 10981787 (+)
CI01000001_10989337_10992917 BIRC5B coding downstream 135354 10989337 ~ 10992978 (+)
CI01000001_11019871_11028065 MYL6, MYL6B coding downstream 165496 11019479 ~ 11028524 (+)
CI01000001_11099313_11137500 HUWE1 coding downstream 245330 11099313 ~ 11138278 (+)
G19080 NA non-coding upstream 35222 10814390 ~ 10815702 (+)
G18998 NA non-coding upstream 193653 10655387 ~ 10657271 (+)
G19041 NA non-coding upstream 196002 10654569 ~ 10654922 (+)
G18997 NA non-coding upstream 251673 10599026 ~ 10599251 (+)
G19008 NA non-coding upstream 252110 10598604 ~ 10598814 (+)
G19087 NA non-coding downstream 19999 10873982 ~ 10874233 (+)
G19088 NA non-coding downstream 20687 10874670 ~ 10874871 (+)
G19034 NA non-coding downstream 38454 10892437 ~ 10896905 (+)
G19130 NA non-coding downstream 71545 10925528 ~ 10986466 (+)
G19121 NA non-coding downstream 216921 11070904 ~ 11126159 (+)
CI01000001_10538498_10539667 RPS26 other upstream 311078 10538388 ~ 10539846 (+)
G18937 NA other upstream 374535 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 454219 10394851 ~ 10396705 (+)
G18872 NA other upstream 569555 10271146 ~ 10281369 (+)
G18873 NA other upstream 590210 10223879 ~ 10260714 (+)
G19314 NA other downstream 647211 11501194 ~ 11558673 (+)
G19395 NA other downstream 827339 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2659421 13514115 ~ 13517063 (+)

Expression


Co-expression Network