XLOC_006854 (loxl4)


Basic Information

Item Value
gene id XLOC_006854
gene name loxl4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40182487 ~ 40238813 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013181
ATGAgatgctaatttattttaattgtattaaacgTTTTATCTGAGCTCTTATTTTACTATACATGTTCTTTAAGTTACTTTTCATGTTGAGGTGAAGATGGAGCAGTGTGTGGGAGGGATGTGGAAGTGATGGAGGGAGAGAGACGGAGGGGGAGGAGAgccacacacaggcacacacacactgctgatgtTCAACTctctccttcattcattttcctccagtCTGTGACTGACGTGACTTACAGCCGGCTGCAGAGCCTCATCGGTGTGCAGTCATGATTCGGGTCTGTCCGCTGTGTATTCTTTTGTTTGCGCTGCTCTTCATGTGTATGGACGCTCGTCCTGGATCATCAGGGCGCTCAAGACGTGCCCCTGCTGCCAAAGTGCGACTGGCAGGCATTGGCCACCAAGAAAACGAGGGACGTGTCGAAGTCTTGCACAACGGGACATGGGGAACTGTATGTGACGACGAGGTCGACATTAAACTGGCTAATGTGGTTTGCAGAGAACTGGGATTTCAAAGCGGCATCACGTGGGCTCACAGTGCCAGATACGGAGAAGGAGAGGGCCCCATTTGGATGGATAATGTGAGATGTGAAGGAACGGAGAAAGCTCTGAGAGATTGCAGGTCAAACGGATGGGGCGTTCATGACTGCAAACACTCGGAGGATCTCGGGGTGGTCTGCAGTCCAGAGAGAAGGCTGGATCAAACATATCCTGGAGTCTCCAGAAGAGGGCACACCATCGCACTCAGACCAAACCCAGTCACGTCCAACCGCTGGCAGGACATTTACTCCAACCCGAGGACACCTGCGCATCTCAGACAGGGCAATGGACACTCACAGGATCAAACCAGATGGGATCAGTTATCCAGACAGCAACTTCCTAATCCGTCTGCCAGTCGGGTAAGGATTGAAGAAGTCCGTCTCAAGCCAGTCCTCATGGTTACAAAGCGCCGTGCCCTCATCACTGAGGGTGTGGTGGAAGTAAAGCATGCTGGGAGATGGAGACAGGTGTGTGATAAAGGCTGGAGTCTGAACAGCAGCAGAGTCGTGTGTGGGATGCTTGGCTTTCCTGACGCGGAGCAGCCCAACATGAACACCTACAAGAAAATATGGGATAAAAAAGTCAAGGATTCAACAACCAGATTGAGTCAGATGGCTAAGAAGAAGGGATTCTGGGTTGAGAAACTTCATTGTTTGGGCACAGAGCCCAGTCTGGCTGAGTGCCACACCCAGCTATCAATCCCTCGAAGCCCCGCCCCCTGCAAGAATGGTCGCTATGCTGTGGCCCGCTGTGTCCCAGGACCACAGTTTGCCCGTATGTCCTCTGGCAGACCGCAGGCACCTCATCCTGTCCAGCTGTCAGTGCGTCTGAAGGCAGGGCCGCGTCTGGGAGAAGGCCGAGTCGAGGTTCTGCGTGAGGGAAAGTGGGGAACCGTGGTTGACCACCTGTGGGACCGTATTTCAGCCAGCGTGGTGTGCAGAGAGCTGGGCTTCGGCACTGCCAAAGAGGCTCTGACTGGAGCTTACATGGGTCAAGGGACGGGACCGATCCACATGAACTCAGTGCGGTGCGCGGGCACAGAGCGCTCTATTTTAGATTGTTTCTTCCAGGACGTCCAGCCCTGGACCTTCAAACACAACCGGGACGCTTCTGTCAAGTGCTACGTTCCTAAGACGGGTGTGGAGAATACGGTGCGTCTGGCGGGCGGCCGGGACCCAGCAGAGGGTCGCGTGGAAGTGCTCATGGAGGACGGCGGTCGAAAACATTGGGGGACGATCTGCAGTGAGAACTGGGGAATAAATGAAGCCATGGTGGTGTGCAGACAGCTGGGCTTTGGTTTCGCTGCTCGCGCCCATCAGGAAACATACTATTGGCAAGGAGACCCAGCGGCAGAGGAAGTGGTGTTGAGTGGCGCTCATTGTGTGGGAACAGAAATGTCAATCCAGCAGTGCCGTCGCAACAGTTATGTCCACTGTCCTCGAGGAGGCGGAGCCAAAGCAGCGGGCGTCACCTGTTCCgagaCTGCACCTGACCTGGTTTTGGATGCGCAGCTGGTTCAGGAGAGCTCTTATCTGGAAGACCGGCCTCTGCATCTGCTCACCTGTGCCCATGAGGAGAATTGTCTGTCCTCATCTGCCAGCCGCATGCAGTGGCCGTACGGGCATCGCCGTCTGTTGCGCTTCTCCTCCCGGATCATGAATCTGGGTAGAGCCGACTTCCGGCCACGGGCTTCAAGGGAGTCCTGGACCTGGCATCAGTGCCACAGgcaTTATCACAGCATTGAAGTGTTTACGCATTATGATCTGCTCACTCTCAATGGGAGCCGAGTAGCAGAAGGACACAAAGCCAGTTTCTGTCTGGAAGACACCTACTGTCCTGAAGGACTTCATAAACGCTTTTCATGTTACAATTATGGCGATCAAGGCATTTCAGTAGGCTGCTGGGACACGTACAGACACGATATCGACTGCCAGTGGATAGACATCACTGACGTGAGGCCCGGAGACTACATCATGCAGGTTGAGGTAAATCCATCGCTGGACATGGCTGAGTCAGACTTCATGAACAACGTCATGCGCTGTCGATGTAAATATGATGGACACAGAGTGTTTATGTATGGCTGCCATGCAGGCGATGCCTACAGCGCTGAAGTTGAGGATTTATTTGAACATCAGCGTCAGATCAGCAATAACTTCATCTGAGACTGAGGAACAGAGGTGAGAGGAGAGGATTGTGGACAATAAATATGGTGCAAGACAAAGAGATTTCTCAGCTGATCTCAGAACAGTCCACCAGATGCTCCACCGAGtggaagctatatatatatatatatatacgtgtacACCATCAAACTGTGCAATTGAATTACGTCTAGTAgattaacaaattatttaatcAAAGGAACATCGTTTAGaggattagttcaccccaaaaatacttatttactttccttttttaataaaatactggTTGTTGCTTTCCAGCTGGTTGCAATGCAATGAATCCAACCCTAGATATTTAAGATTCAAAAAAGATACATAACAAGTCCTAAAATATGTGTATTTTCACAGACATCGAATATCTCTTTTTCACTTTTGAGATGTAAAATTAATTATAGCTTTATTTTAAGTCAGTCTTTTCTTGATCATTTTGTGTCAGAAGACTTGGAATATActtttatacactgaaaaaactgGTGCATGATTTACTTTCAGATTTTGTATTTACCAGcagaaatatattacaaaatgagCTTTTGCACCAAGTAGTTATAGGAACTAGCCACCGGTCCTCAAGAAATTTCTCCTTTAATCATTTAGTTGCATTATTAGCATCTTGAACATGAGCTCTGAAATAACACATGCCAGCTGACAGTAGCATTTAACTCAGTCAACTAGAGGATGGCGGATGCTGTGGTTTTATTGTGTGTCGATGGTTTCGTAATTTCAGAGATGAATTGTTGACATGAAAGTTATGGGATTAAAAAAAGCAGAAAGTATTACTAAGATTTCAATAACAGAGAAAGCATTTTTGTGTCTAAAATGTGGGATGCAGGGCATTAGGAATGGTATTAAAAAAAGGTATAAAGCCCAGGACACACTTAGCTGTCAAAGAACTAGCGGTGATGAAAATCAACTGTTATCACTTTCCATTTACTGTGTCTGGTTCCATCTGGACCAAAAACTTGAACTTAGTTCTTCTAAAAGGCATTCCTTCACCTAAAATATTTCCTAGTTCCTGTGGTGTGATTTGTGCAAAGATGCCAAAAAGTATGTACTTTTGCCAATAGTTCTAAGAACTATGAAGGCTTTTGTCTGGTGTCAAAGCCTGTAATGATACAACAATTAGCCCTTTGAATTAACCatgaacatttaagtttaagtatAGTTAACTTCCAGGTAGCAAATAATTCTGGCtcaaatttggcataaatctggcactggcatacaggatgtgggccaaacatggccctggtttgacAGAGGTGGTACTGTCTTAAGGTGGCACACGATAATTGGcacagatgtaaaatgtagtatttggcccagttggtaataattgatatgtgggccatgtaagtttggcctatcttgacccacatttaaaatatatttttattattttctactaATCAGgttgctttgagaaaaagcacaccCAAAGCATGCCTAAAGCgcaatgattcatgggtttatcagtTTCATTGGAGTCGTGatacaccaacatatctggcccagttcgggctcagttatgggttattaacttggctgacacttggcccagatatggtccatgtttgacccttgtctggaagccaggcttggtccagtcatgtaccataattcactgcagcatgtgggccaagcaaaagctgaatgTGTGGGCCAGAGCTCGGCCAAATATATCACCTTTTGtgttttacaaaagaaaaagaagtaTATTTTCAGGTGAACTGATGAACTGTTCCTTTTATTATCCATCGAGTAACTGAGGGTGTTTTCCCAACACTAAGCATTGTTTGTGTTGTTCAGTAAGATCCAatggagaaaatgaaaaaacTTCATGAAAGATGTTGTTCTTGCATCTTTGTGTTCTCACAGCATCAATGGTTGTCAAACCAGGCCCAAATgtatagttttctttttttttttgtacttttggtttgaaaaaaacaaaccacAAGAACGGATCTACAAGTGTGAACAGCCAAAGTTCCTTGCAGCTGTTGTGAAGTGATCATCCTGTAAAACTGAAACATTATGCTAAATTTGTAGCTTTTGAGACCATGAGACTAGCATTAGAAAAAATCTAATTCCTTACTGTAGTCTATGTGTACccatatatttatttcattatgcTATCCGTATAATGTTTAATTTTCTATTACAAGATAGTCTGAACAACATTTTACAGGAAAATACATTTAAGACGTTTTTAATATCACCAATATGGTCTATTTTATATGAAATCCAGATGGAGTGTCtctaattttactgttttttttatgaataCCTAATTTCTTTTTATACCCAATTACTTTTATTTAGATTCATGCACTTTATTGATGAACCATCAGTATTCCGGTACAAATATACTAACATCTTTCAGCGCGTGCTTctgataatttgtttattaaagtatttatacTTGCTTTCCTTTTTTAATAGACCTTTCTATATTTTAGGCGACTTTCCTGAATCCTGAAGGATGTTGTAAATGCTgaagattaatttattttaatacattgtaAAACAAAATTTCTGGATGAGAGTTTTATTAGTTTGATAATTCATAGTACTATCAATAAGTGCTTGCGAAATGGTTGACtgcttttatattcatttaacaGCAGTGGGTGAATGGAGCTTGTTTTCTTATAGTCTAGCGTGTACTTGAAGCTTTTTTCTTTTAACATCTATGAGTACAGTTTCGACTTATGAAGTGATGTTGAGAATACCCTGTATAAAGTGTAAAGCTCATTGCAGCATTTTATGATGAGCTAAAATCTAGCTTGAACTCATTTATGGCCCAAAGCATTACATGTATCCCTAAAGTAGCGAAACCTTTTgtctatatatattaaaaaaaaagacacttttcTTAACTGTACTGTATCAGTCTTAAGGTTTGCAATGTACATTATACTGCACGTTGGCACAGTATAAAATGTGCATGACATGAATAGAATCGTTCCTAATGTTATGTCAAATCATCCTGTTATTTATCTTCAAGTATTCAATCGTTGATTTTTATCACAGTAAGTGATTATTGTGGCCATTTTCCCTTATGTACTTTACATTTTCACAATCTCTGTATTGTTTAGCTTTATTATAACCATGTTACCCTTGATCTCTTTTTATCCATGACTTTATTTATGATTCTCATTTTACTGTGTGCTCTTAGAATTATCAGTGCATAAATTGTTTCATAATTGGTCCGTAATACATATAATCCTCTGGTGCTATTTGTGCAATTTTTTTCTGGGAGTTTTCCATGTATTATTTGAGAGTTCATAAGCTCTTAATGTAGATCACAGTACTCTCAGGGATAAAATATGTATCTTTGTTTTTCTTCCAgtttgtttaaaatgatatattatgatCAGCCAGGACAGATGTAAAGTTCTAACAATATCATTCCGCACACTGCAACATGTTATTGTTTTGTGATGGGTGTTACAGTAGTGAGTCGATGCGAACAACTGATCTCAAATGTGAATGAATATCACTCGTTGGGTCTCATTTAGCTGCCTGTTCTCTGTTTTTCTGCTCATGATCCATTGCACAGAGACTCCATTAtcaataaatgtgtgtttgtgaaagtC
>TCONS_00013182
ATGATTCGGGTCTGTCCGCTGTGTATTCTTTTGTTTGCGCTGCTCTTCATGTGTATGGACGCTCGTCCTGGATCATCAGGGCGCTCAAGACGTGCCCCTGCTGCCAAAGTGCGACTGGCAGGCATTGGCCACCAAGAAAACGAGGGACGTGTCGAAGTCTTGCACAACGGGACATGGGGAACTGTATGTGACGACGAGGTCGACATTAAACTGGCTAATGTGGTTTGCAGAGAACTGGGATTTCAAAGCGGCATCACGTGGGCTCACAGTGCCAGATACGGAGAAGGAGAGGGCCCCATTTGGATGGATAATGTGAGATGTGAAGGAACGGAGAAAGCTCTGAGAGATTGCAGGTCAAACGGATGGGGCGTTCATGACTGCAAACACTCGGAGGATCTCGGGGTGGTCTGCAGTCCAGAGAGAAGGCTGGATCAAACATATCCTGGAGTCTCCAGAAGAGGGCACACCATCGCACTCAGACCAAACCCAGTCACGTCCAACCGCTGGCAGGACATTTACTCCAACCCGAGGACACCTGCGCATCTCAGACAGGGCAATGGACACTCACAGGATCAAACCAGATGGGATCAGTTATCCAGACAGCAACTTCCTAATCCGgaatctggaggaatttcagtTCGGGTAAGGATTGAAGAAGTCCGTCTCAAGCCAGTCCTCATGGTTACAAAGCGCCGTGCCCTCATCACTGAGGGTGTGGTGGAAGTAAAGCATGCTGGGAGATGGAGACAGGTGTGTGATAAAGGCTGGAGTCTGAACAGCAGCAGAGTCGTGTGTGGGATGCTTGGCTTTCCTGACGCGGAGCAGCCCAACATGAACACCTACAAGAAAATATGGGATAAAAAAGTCAAGGATTCAACAACCAGATTGAGTCAGATGGCTAAGAAGAAGGGATTCTGGGTTGAGAAACTTCATTGTTTGGGCACAGAGCCCAGTCTGGCTGAGTGCCACACCCAGCTATCAATCCCTCGAAGCCCCGCCCCCTGCAAGAATGGTCGCTATGCTGTGGCCCGCTGTGTCCCAGGACCACAGTTTGCCCGTATGTCCTCTGAAACCTCATCAATTTCATTTCTTCACTCATACGTGGTGTGCAGAGAGCTGGGCTTCGGCACTGCCAAAGAGGCTCTGACTGGAGCTTACATGGGTCAAGGGACGGGACCGATCCACATGAACTCAGTGCGGTGCGCGGGCACAGAGCGCTCTATTTTAGATTGTTTCTTCCAGGACGTCCAGCCCTGGACCTTCAAACACAACCGGGACGCTTCTGTCAAGTGCTACGTTCCTAAGACGGGTGTGGAGAATACGGTGCGTCTGGCGGGCGGCCGGGACCCAGCAGAGGGTCGCGTGGAAGTGCTCATGGAGGACGGCGGTCGAAAACATTGGGGGACGATCTGCAGTGAGAACTGGGGAATAAATGAAGCCATGGTGGTGTGCAGACAGCTGGGCTTTGGTTTCGCTGCTCGCGCCCATCAGGAAACATACTATTGGCAAGGAGACCCAGCGGCAGAGGAAGTGGTGTTGAGTGGCGCTCATTGTGTGGGAACAGAAATGTCAATCCAGCAGTGCCGTCGCAACAGTTATGTCCACTGTCCTCGAGGAGGCGGAGCCAAAGCAGCGGGCGTCACCTGTTCCgagaCTGCACCTGACCTGGTTTTGGATGCGCAGCTGGTTCAGGAGAGCTCTTATCTGGAAGACCGGCCTCTGCATCTGCTCACCTGTGCCCATGAGGAGAATTGTCTGTCCTCATCTGCCAGCCGCATGCAGTGGCCGTACGGGCATCGCCGTCTGTTGCGCTTCTCCTCCCGGATCATGAATCTGGGTAGAGCCGACTTCCGGCCACGGGCTTCAAGGGAGTCCTGGACCTGGCATCAGTGCCACAGgcaTTATCACAGCATTGAAGTGTTTACGCATTATGATCTGCTCACTCTCAATGGGAGCCGAGTAGCAGAAGGACACAAAGCCAGTTTCTGTCTGGAAGACACCTACTGTCCTGAAGGACTTCATAAACGCTTTTCATGTTACAATTATGGCGATCAAGGCATTTCAGTAGGCTGCTGGGACACGTACAGACACGATATCGACTGCCAGTGGATAGACATCACTGACGTGAGGCCCGGAGACTACATCATGCAGGTTGAGGTAAATCCATCGCTGGACATGGCTGAGTCAGACTTCATGAACAACGTCATGCGCTGTCGATGTAAATATGATGGACACAGAGTGTTTATGTATGGCTGCCATGCAGGCGATGCCTACAGCGCTGAAGTTGAGGATTTATTTGAACATCAGCGTCAGATCAGCAATAACTTCATCTGA

Function

symbol description
loxl4 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0018057 peptidyl-lysine oxidation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080722-19 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

Ensembl:

ensembl_id ENSDARG00000025089

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013181 False 6331 mRNA 0.43 15 40182487 40238813
TCONS_00013182 True 2334 mRNA 0.53 16 40186110 40237121

Neighbor

gene id symbol gene type direction distance location
XLOC_006853 crtac1b coding downstream 40857 40064481 ~ 40141630 (-)
XLOC_006852 sfrp5 coding downstream 235152 39911551 ~ 39947335 (-)
XLOC_006851 zgc:171482 coding downstream 351488 39656610 ~ 39830999 (-)
XLOC_006850 NA coding downstream 677994 39499592 ~ 39504493 (-)
XLOC_006849 slc35f3b coding downstream 782520 39346298 ~ 39399967 (-)
XLOC_006855 zgc:123010 coding upstream 8566 40247379 ~ 40282770 (-)
XLOC_006856 pyroxd2 coding upstream 46059 40284872 ~ 40316367 (-)
XLOC_006857 nkx3.3 coding upstream 158704 40397517 ~ 40401870 (-)
XLOC_006858 nkx2.3 coding upstream 170402 40409215 ~ 40411917 (-)
XLOC_006859 NA coding upstream 179503 40418316 ~ 40419308 (-)
XLOC_006471 BX537274.2 misc downstream 29917582 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 39356262 825904 ~ 826225 (-)
XLOC_006848 BX324188.2 non-coding downstream 939815 39242555 ~ 39242672 (-)
XLOC_006846 BX323574.1 non-coding downstream 1329235 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 1562768 38613225 ~ 38619719 (-)
XLOC_006842 NA non-coding downstream 1987273 38190521 ~ 38195214 (-)
XLOC_006863 NA non-coding upstream 722922 40961735 ~ 40977410 (-)
XLOC_006864 NA non-coding upstream 773019 41011832 ~ 41114062 (-)
XLOC_006866 BX548002.1 non-coding upstream 991480 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 1424159 41662972 ~ 41663088 (-)

Expression


Co-expression Network