G19096


Basic Information

Item Value
gene id G19096
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11255069 ~ 11304024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21459
TGTAAAAAACAAAAATATGGGCGTAGTTGTCCGTGACGTCACCTGTAGATTTCTGAAGAGCATTTTTGAAGCGAAAAAGTGTTGCCATTTTGGCAGCACATCATTGCGCGTCACTCCCAGATAACTGAAAATGGGCAAAGAGGCGGGACGTGGTTGGAACTGAGGTGCCTGGTTACTGAAACCATGCCTGCCTAGCGCAACGTGATCATGTTAGCAGGCTAAAGAAGCTATCTATCTATCTAAGACACTATCTAAAATATTAATAGAGATAAGTTATATCATTTGAAGGTTTACTGTCAATCTTCGGTGTCTTTTTTACGATATAGATGCTCCAGCAACAGTAATATTGGAATTTTGTGTCGGGTGTGCAAATAACAACATGCAAAATCAAGACGAGACTTCATACCTTTGTAATGAAAATGTGATCACGAGATGATCCATTTAAAAACAAACAAAGACACTTTTTGTCCACAAAAGCGTTAAATCCATGAAATATTGTTATATTGTCCATTGTTTGCATCACGTGTCTTCTGAATGATCTGCTCTCCATCATTGTTCTTCAAGAAATTGTGCAATCTGAGCAGCGTTTATGTTAAGGTATAATTTTTCAAAATAGTGTTTTAGTTATAATATCCAAGCAGTGCTGTAGGAGTTTGTGGTGTCTTGAGAGGCATATTCTCCAACCATTGTCATAGTAAATCTCACGAACAAAACTTTTAGCCAATGCCAAGACGATCCAACAAGGTGTGTTCTGTTTATCTTCCGCATGTGTGCACATGTACACAGACGTACATCGATCTCGACCATATAACCGACCACATATTATTTGATAATTGTGTAAAATAATCCCGAAAAAAGCACAAACATGGCAGAGATGCCAAATTTAGTGGCTGGAATTAGCTGAGGTAACATGACGGCTCACAGACAGCAACGGCAATCTACCTGCCACTCAAGTGACCACGCCCTAAATTATGCAGAACTTTAAGGCTTAATATAATTTAAACGGACGAGTTATAAAAAAATTCACCCCCCCTCAGAGTTGTCATGAAGGGCAGAATTAGACCAAAACCACAATTTATACCAGGCTGTAAACTTAAGCTGTTTTTTCTGCTGTAAGTTGGGCATTTTAACATGGGACTCAATGAGATTTTGCTCTCTTTTGGAGCCTGTCTCTAGCGGCCAGTCGATGAATTGCAGTTTAAGTCACTTCCGTATTGGCTTTTGGGAAGGAAACATGTCACACTACACGTTGCTTCCCAACCAATCATCGCTATCCATCTTTTTAACGACGTGCATGATGTCATCGAGACGGCGGAACTAGAAGAGCGTAAACAAAAAATGGTTGTACTAGCCTAATGCTTCCAGTACTCACCAGGTTGCCAAAGTGCCTCCACTATCATTTGCCAGCATTTATATTTTTTCACTCTGTCATAGTGATCCCTTGAGGAACCATAAAAGCAAGGGTATTGTTGCCATGGACTAGTTGCACGTGGCCACCATTTTGGATTTTCGATCAGCGAGTGTACACATATACACTTCCGGTTTTGCTTTATGCCGGTGCAGAGTGCCAGGGAAAGCCGAAAATGATCTCTTATAGCTGTTTATAGAATTTGTTATATCGCTTAAAAACAACTAAGATATTTAGTACAATCACACGAGCCAATGGCATTTAAATGCAGGCATGGGTTAGTTAGATTAACAAACTCACGGTACGTACACATATACAATGACAATAATGCCTGTAAATATACAACTACGATTAGAGTTGTCTGCATAAAATGCCTTGTGAACATTCACACGTTTGCCCTGTGATAAATTTATTTCCATAAATACTATTTTCTCAATTCTGCGCATATATTTTCACTTACCTACATCAATCGCTCCATCAATATGATCACTACATATTTTACGATTTCTTTGCATCAGTTATCTTTTTAGATAAAAACAAGGGCTGTGAAAAGATTGCGATTAATTTACATTTTTAACTGTAGCACAAACAGTTTAATATAGATACGTTTTTTTTTTTTTTACCTGTAGTAAAATACGTTTTTTGCTGCTTAGACGAGACAGATAATGATGCAACAGATGCTCTTTACTCGTCTCACTTGAACTAAATAAATGCAGTAATTAATAGAAACGCACAGGGGAAATACAAACACTGAAAATTATGCATTTAAATTACATTGGCTACTAAATAATACAGTTAGCGATAATAATGTTACCAAATAAAGTTACTTAAGCATACACTGAGTCCATATCATATTCCCATGTTTATTTATCTCTGATGAGGACTGATACTTCAGTTGACAATAGCAAACATTAGATCTTCATGAAGGTCGAGTGTTGTTCCACGCAGAAAGAGAAGGCAGTTTTTGAGCCATTTAGTCCCCCAGCTGTCAGAACAAAATCAGGAGATATATATTACATACTTGAGTGTTTTGTATGGAGAAAGAGATCCCTGTGGATCACCGCTGAGCCGGAACCGCATAATCAACAGGAGAAAGATTGAAAGTCAAAGATTGCGTATCTCGTTGAATTTCCACACAGAGGTAACGTTACACAATAATATAACAAGGATGTTTTCTTTCGTCTCTGATAGACCACCATCTTCTCTTTAATTAAAAAAAAAATCTATTATGTCTAGCCAAGTTTTCATATTTAAGTTTCTTCTTGCACCAAATGCAAGCGTCGCTAAGACCAGAAGGGCACGAGCGGAAGTAACCATGCGCACAGGCCCTGTCCTAAATCTATGCACTTTCGGTCTTGTGGACTTACAATGGCTGCCGCGTGCACGTGTCCGTTAAGTCCACGAGACTGTAGGGTGTCCCATTTGTCAATTTTAGGCTTCAGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21459 True 2853 lncRNA 0.50 2 11255069 11304024

Neighbor

gene id symbol gene type direction distance location
CI01000001_11246797_11247315 CORT, SST3 coding upstream 7528 11246649 ~ 11247541 (+)
CI01000001_11232168_11238289 SRM coding upstream 16414 11232168 ~ 11238655 (+)
CI01000001_11216246_11230227 SMC1A, SMC1A.L, SMC1AB, SMC1AL coding upstream 24748 11216246 ~ 11230321 (+)
CI01000001_11182552_11204143 NADL1.2 coding upstream 50570 11182552 ~ 11204499 (+)
CI01000001_11138617_11139541 NA coding upstream 115396 11138285 ~ 11139673 (+)
CI01000001_11359106_11376288 NA coding downstream 55082 11359106 ~ 11376885 (+)
CI01000001_11431153_11431434 NA coding downstream 125852 11429876 ~ 11431587 (+)
CI01000001_11440491_11445508 NA coding downstream 135955 11439979 ~ 11445540 (+)
CI01000001_11656975_11660666 TARDBPL, TARDBP coding downstream 352005 11656029 ~ 11661866 (+)
CI01000001_11756218_11760009 NA coding downstream 452137 11756161 ~ 11761497 (+)
G19226 NA non-coding upstream 71299 11169293 ~ 11183770 (+)
G19121 NA non-coding upstream 128910 11070904 ~ 11126159 (+)
G19130 NA non-coding upstream 268603 10925528 ~ 10986466 (+)
G19034 NA non-coding upstream 358164 10892437 ~ 10896905 (+)
G19088 NA non-coding upstream 380198 10874670 ~ 10874871 (+)
G19108 NA non-coding downstream 77550 11381574 ~ 11381987 (+)
G19258 NA non-coding downstream 83619 11387643 ~ 11387959 (+)
G19259 NA non-coding downstream 85531 11389555 ~ 11389858 (+)
G19266 NA non-coding downstream 124080 11428104 ~ 11493856 (+)
G19312 NA non-coding downstream 196193 11500217 ~ 11500514 (+)
G19039 NA other upstream 401086 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 715223 10538388 ~ 10539846 (+)
G18937 NA other upstream 778680 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 858364 10394851 ~ 10396705 (+)
G18872 NA other upstream 973700 10271146 ~ 10281369 (+)
G19314 NA other downstream 197170 11501194 ~ 11558673 (+)
G19395 NA other downstream 377298 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2209380 13514115 ~ 13517063 (+)

Expression


Co-expression Network