Gene
RNA
| Item | Value |
|---|---|
| gene id | G19266 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 11428104 ~ 11493856 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU21642 | False | 591 | lncRNA | 0.56 | 2 | 11428104 | 11493856 |
| TU21647 | True | 593 | lncRNA | 0.31 | 2 | 11428104 | 11493856 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_11359106_11376288 | NA | coding | upstream | 51219 | 11359106 ~ 11376885 (+) |
| CI01000001_11265638_11283027 | MASP2 | coding | upstream | 144868 | 11265638 ~ 11283236 (+) |
| CI01000001_11246797_11247315 | CORT, SST3 | coding | upstream | 180563 | 11246649 ~ 11247541 (+) |
| CI01000001_11232168_11238289 | SRM | coding | upstream | 189449 | 11232168 ~ 11238655 (+) |
| CI01000001_11216246_11230227 | SMC1A, SMC1A.L, SMC1AB, SMC1AL | coding | upstream | 197783 | 11216246 ~ 11230321 (+) |
| CI01000001_11656975_11660666 | TARDBPL, TARDBP | coding | downstream | 162173 | 11656029 ~ 11661866 (+) |
| CI01000001_11756218_11760009 | NA | coding | downstream | 262305 | 11756161 ~ 11761497 (+) |
| CI01000001_11809724_11812692 | LZIC | coding | downstream | 315571 | 11809427 ~ 11813444 (+) |
| CI01000001_11898621_11898914 | NA | coding | downstream | 404441 | 11898297 ~ 11900188 (+) |
| CI01000001_11990189_11991073 | AURKAIP1 | coding | downstream | 494221 | 11988077 ~ 11991195 (+) |
| G19259 | NA | non-coding | upstream | 38246 | 11389555 ~ 11389858 (+) |
| G19258 | NA | non-coding | upstream | 40145 | 11387643 ~ 11387959 (+) |
| G19108 | NA | non-coding | upstream | 46117 | 11381574 ~ 11381987 (+) |
| G19096 | NA | non-coding | upstream | 124080 | 11255069 ~ 11304024 (+) |
| G19226 | NA | non-coding | upstream | 244334 | 11169293 ~ 11183770 (+) |
| G19312 | NA | non-coding | downstream | 6361 | 11500217 ~ 11500514 (+) |
| G19349 | NA | non-coding | downstream | 175108 | 11668964 ~ 11670995 (+) |
| G19394 | NA | non-coding | downstream | 186851 | 11680707 ~ 11680946 (+) |
| G19351 | NA | non-coding | downstream | 188701 | 11682557 ~ 11687675 (+) |
| G19362 | NA | non-coding | downstream | 196069 | 11689925 ~ 11690609 (+) |
| G19039 | NA | other | upstream | 574121 | 10850924 ~ 10853983 (+) |
| CI01000001_10538498_10539667 | RPS26 | other | upstream | 888258 | 10538388 ~ 10539846 (+) |
| G18937 | NA | other | upstream | 951715 | 10474984 ~ 10476389 (+) |
| CI01000001_10395420_10396473 | NA | other | upstream | 1031399 | 10394851 ~ 10396705 (+) |
| G18872 | NA | other | upstream | 1146735 | 10271146 ~ 10281369 (+) |
| G19314 | NA | other | downstream | 7338 | 11501194 ~ 11558673 (+) |
| G19395 | NA | other | downstream | 187466 | 11681322 ~ 11681817 (+) |
| CI01000001_13514115_13517063 | NA | other | downstream | 2019548 | 13514115 ~ 13517063 (+) |
