G19349


Basic Information

Item Value
gene id G19349
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11668964 ~ 11670995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21742
TCTTTATTTAGCCTAATGCAGTGCAATAGTTACCCATAATCCAGGGTTAACGCTGTGAACTCTGGGGGCAAAGTATGACTGGTCTACAGCAGGAAGAATCTCAGAAACAACTTTACTCGAAATGTTGCGTTTGCGACAGTGCACCTTAAAACTACAAGAAAGGAGCTTACAAATAGTGTATACACTGATTTAGTATGAATAGAAATGTGTATTTGAACTCTACTGTGGGCTGAACGTCAGCTCTTCAGAAGGAATGTGATCAGCTGCTCTGGTCCTTCATCAAGAGGGGATGATGTTCTTTAACATGACTCTTCATTTTAGGCGTTATAGGATGATGACGACACTTTTCCTCCGTGTCCTGTCCAGTTAGTGTGGATGAACTTCCCAGGGTTTGATAGCAGCTCATATGTATGGGCACCGAAGTAGTCCCTCTGTGCCTGCAGGTTTGCTGGGAGCATGTCGTGCCTGTAACCGTCGTAGAAGGACAGGGCGGTGGTGAAACATGGCATGGGGATCCCCTGCTGCACACCTGTACTTACTACCCTACGCCATGAGTCCTGCAAAACACAAGCCACGTTTATACACTGAATAAAACACATTCTACATGTATTAATCAGCATGGTTTTAGCAGTCTTTCAAGGTAAACCAGGATTCCTACACATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21742 True 664 lncRNA 0.44 2 11668964 11670995

Neighbor

gene id symbol gene type direction distance location
CI01000001_11656975_11660666 TARDBPL, TARDBP coding upstream 7098 11656029 ~ 11661866 (+)
CI01000001_11440491_11445508 NA coding upstream 223424 11439979 ~ 11445540 (+)
CI01000001_11431153_11431434 NA coding upstream 237377 11429876 ~ 11431587 (+)
CI01000001_11359106_11376288 NA coding upstream 292079 11359106 ~ 11376885 (+)
CI01000001_11265638_11283027 MASP2 coding upstream 385728 11265638 ~ 11283236 (+)
CI01000001_11756218_11760009 NA coding downstream 85166 11756161 ~ 11761497 (+)
CI01000001_11809724_11812692 LZIC coding downstream 138432 11809427 ~ 11813444 (+)
CI01000001_11898621_11898914 NA coding downstream 227302 11898297 ~ 11900188 (+)
CI01000001_11990189_11991073 AURKAIP1 coding downstream 317082 11988077 ~ 11991195 (+)
CI01000001_11994138_12003906 NA coding downstream 323143 11994138 ~ 12004100 (+)
G19312 NA non-coding upstream 168450 11500217 ~ 11500514 (+)
G19266 NA non-coding upstream 175108 11428104 ~ 11493856 (+)
G19259 NA non-coding upstream 279106 11389555 ~ 11389858 (+)
G19258 NA non-coding upstream 281005 11387643 ~ 11387959 (+)
G19108 NA non-coding upstream 286977 11381574 ~ 11381987 (+)
G19394 NA non-coding downstream 9712 11680707 ~ 11680946 (+)
G19351 NA non-coding downstream 11562 11682557 ~ 11687675 (+)
G19362 NA non-coding downstream 18930 11689925 ~ 11690609 (+)
G19411 NA non-coding downstream 85602 11756597 ~ 11758207 (+)
G19358 NA non-coding downstream 123809 11794804 ~ 11797310 (+)
G19314 NA other upstream 110291 11501194 ~ 11558673 (+)
G19039 NA other upstream 814981 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1129118 10538388 ~ 10539846 (+)
G18937 NA other upstream 1192575 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 1272259 10394851 ~ 10396705 (+)
G19395 NA other downstream 10327 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 1842409 13514115 ~ 13517063 (+)

Expression


Co-expression Network