G19395


Basic Information

Item Value
gene id G19395
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11681322 ~ 11681817 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21803
CCTCATGGCAAAGAACTCTCAGAGGATCTGAAAAAAATAATTGTTGCTCTACATAAAGATGGTGTAGGCTATAAGAAGATTGCCAAGACCCTGAAACTGAGCTGCAGCACGGTGGCCAAGACCATACAGCGGTTTAACAGGACAGGTTCCACTCAGAACAGGCCTTGCCATGGTCGACCAAAGAAGTATCCAGAGGTTGTGTTTGGGAAATAGACGTATGAGTGCTGCCAGCATTGCTGCAGAGGTTGAAGGGGTGGGGGGTCAGCCTGTCAGTGCTCAGACCATACGCCGCACACTGCATCTAATTGGTCTGCATGGCTGTCGTCCCAGAAGGAAGCCTCTTCTAAAGATGATGCACAAGAAAGCCTGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACATGGATTACTGGAACCATGTCCTGTGGTCTGATGAGACCAAGAGAAACTTATTTGGTTCAGATGGTGTCA

Function

NR:

description
PREDICTED: zinc finger protein 850-like

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21803 True 473 TUCP 0.48 2 11681322 11681817

Neighbor

gene id symbol gene type direction distance location
CI01000001_11656975_11660666 TARDBPL, TARDBP coding upstream 19456 11656029 ~ 11661866 (+)
CI01000001_11440491_11445508 NA coding upstream 235782 11439979 ~ 11445540 (+)
CI01000001_11431153_11431434 NA coding upstream 249735 11429876 ~ 11431587 (+)
CI01000001_11359106_11376288 NA coding upstream 304437 11359106 ~ 11376885 (+)
CI01000001_11265638_11283027 MASP2 coding upstream 398086 11265638 ~ 11283236 (+)
CI01000001_11756218_11760009 NA coding downstream 74344 11756161 ~ 11761497 (+)
CI01000001_11809724_11812692 LZIC coding downstream 127610 11809427 ~ 11813444 (+)
CI01000001_11898621_11898914 NA coding downstream 216480 11898297 ~ 11900188 (+)
CI01000001_11990189_11991073 AURKAIP1 coding downstream 306260 11988077 ~ 11991195 (+)
CI01000001_11994138_12003906 NA coding downstream 312321 11994138 ~ 12004100 (+)
G19394 NA non-coding upstream 376 11680707 ~ 11680946 (+)
G19349 NA non-coding upstream 10327 11668964 ~ 11670995 (+)
G19312 NA non-coding upstream 180808 11500217 ~ 11500514 (+)
G19266 NA non-coding upstream 187466 11428104 ~ 11493856 (+)
G19259 NA non-coding upstream 291464 11389555 ~ 11389858 (+)
G19351 NA non-coding downstream 740 11682557 ~ 11687675 (+)
G19362 NA non-coding downstream 8108 11689925 ~ 11690609 (+)
G19411 NA non-coding downstream 74780 11756597 ~ 11758207 (+)
G19358 NA non-coding downstream 112987 11794804 ~ 11797310 (+)
G19353 NA non-coding downstream 132697 11814514 ~ 11814714 (+)
G19314 NA other upstream 122649 11501194 ~ 11558673 (+)
G19039 NA other upstream 827339 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1141476 10538388 ~ 10539846 (+)
G18937 NA other upstream 1204933 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 1284617 10394851 ~ 10396705 (+)
CI01000001_13514115_13517063 NA other downstream 1831587 13514115 ~ 13517063 (+)

Expression


Co-expression Network