Item | Value |
---|---|
gene id | G19362 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000001 |
NCBI id | null |
chromosome length | 13537560 |
location | 11689925 ~ 11690609 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU21765 | True | 555 | lncRNA | 0.47 | 2 | 11689925 | 11690609 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000001_11656975_11660666 | TARDBPL, TARDBP | coding | upstream | 28059 | 11656029 ~ 11661866 (+) |
CI01000001_11440491_11445508 | NA | coding | upstream | 244385 | 11439979 ~ 11445540 (+) |
CI01000001_11431153_11431434 | NA | coding | upstream | 258338 | 11429876 ~ 11431587 (+) |
CI01000001_11359106_11376288 | NA | coding | upstream | 313040 | 11359106 ~ 11376885 (+) |
CI01000001_11265638_11283027 | MASP2 | coding | upstream | 406689 | 11265638 ~ 11283236 (+) |
CI01000001_11756218_11760009 | NA | coding | downstream | 65552 | 11756161 ~ 11761497 (+) |
CI01000001_11809724_11812692 | LZIC | coding | downstream | 118818 | 11809427 ~ 11813444 (+) |
CI01000001_11898621_11898914 | NA | coding | downstream | 207688 | 11898297 ~ 11900188 (+) |
CI01000001_11990189_11991073 | AURKAIP1 | coding | downstream | 297468 | 11988077 ~ 11991195 (+) |
CI01000001_11994138_12003906 | NA | coding | downstream | 303529 | 11994138 ~ 12004100 (+) |
G19351 | NA | non-coding | upstream | 2250 | 11682557 ~ 11687675 (+) |
G19394 | NA | non-coding | upstream | 8979 | 11680707 ~ 11680946 (+) |
G19349 | NA | non-coding | upstream | 18930 | 11668964 ~ 11670995 (+) |
G19312 | NA | non-coding | upstream | 189411 | 11500217 ~ 11500514 (+) |
G19266 | NA | non-coding | upstream | 196069 | 11428104 ~ 11493856 (+) |
G19411 | NA | non-coding | downstream | 65988 | 11756597 ~ 11758207 (+) |
G19358 | NA | non-coding | downstream | 104195 | 11794804 ~ 11797310 (+) |
G19353 | NA | non-coding | downstream | 123905 | 11814514 ~ 11814714 (+) |
G19435 | NA | non-coding | downstream | 139923 | 11830532 ~ 11831123 (+) |
G19438 | NA | non-coding | downstream | 161745 | 11852354 ~ 11876252 (+) |
G19395 | NA | other | upstream | 8108 | 11681322 ~ 11681817 (+) |
G19314 | NA | other | upstream | 131252 | 11501194 ~ 11558673 (+) |
G19039 | NA | other | upstream | 835942 | 10850924 ~ 10853983 (+) |
CI01000001_10538498_10539667 | RPS26 | other | upstream | 1150079 | 10538388 ~ 10539846 (+) |
G18937 | NA | other | upstream | 1213536 | 10474984 ~ 10476389 (+) |
CI01000001_13514115_13517063 | NA | other | downstream | 1822795 | 13514115 ~ 13517063 (+) |