G19411


Basic Information

Item Value
gene id G19411
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11756597 ~ 11758207 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21820
AGTTCATGATTCTGATTGGTCAATAGCTGTGTTTTATTCACGATAAAACATGGATATGACCGCTTCACCCAACGGTTCTGTGTATCACTACACAACACCCTTAGCAAACACCCTTAGCAAACACTCTTAGCCACGTAAAACTGTTTGTTACACCATGTCTACACCAGACGCGACTTTTTGCGCATCGCGCCGCAACAACTAAAAGCTGTCTACACTGAACGCAACAAGACGACCGTTGGAAAGCACTTGGACTAGAAATAGAACGAGGAATCCGTTTACTGTTGAATGAGTTTATTACCTACATTCAGATCTGTTAAAATGTCCGATGTATTATCTTGTCCTTTTAACAGTTAGGGGGTTTTCCCGTGACTGACAGCGCTAGTCATTTGTCAGTTGCGTCTTGTTCCGTGTTCACAACAATTCAGTCTTTTCAATATAAAAGTCCTCGCTACTGACTGACACACTCATAAAGACAGTCTTTGCCGCCATCTAATGGCGTTATAATGTAACTTCTGTTGCTGTTCACGGTCAGGGACTATTTTTTCCAGTGAAAGGAAGGCTTTAGTGAAAGTTTACTTCATGAAAGTTGCATTGATACATATTTTTGGCTTTAATATTTGTATTGTGTGGTAACAGTTTTACAAAAGCAATAAAATATTTTAAAACAATTTGAGTTGACTATATGTTAGCTATATATTAATAATGATAAAAGATATTTATGATGTTTTGCATGTTTTTTATGTATCCGAGTTCATTAGGAGCATTTGCATAACACACTACTGCACCAGACTGGAAATAAAGGCATAAAATGCACATTACATATGTCTATATTTTCAACATTTGCTTAAAATTCACTTATTTTGCAAGGCAATATGTGATTGTAATTTAAAGTGCATATAATAATCATGGTTATATCAAATCATAATGATTAGAAGGGTTGAGAAGGTCAGTTATGTAATAATGGCAACAGGCCTACCTTACATCATCACACAGTCCTAGACGAAAGATGATATACTTAGATGATTTACAGAACATCCACACATAAATCAAGTTCTCCAACCAAGATCTATACAACTAAGACATGCACAAAAAAAAAAAAAAATTAAAATAGCACCTAGAATGTACAAAAACCTGCATGCAAAGACACTTGTAAAAAAGCTAGCAGACATCTGAAATGTCAAAGAAGATGTATGTAAATCATCTTGGAAATTTCATTAGAATCACCAAATTTCTCCTTGCTGAGAAATCCATCTCCTAGGTTGAGTGACAGGTGTAGATATAATCTGCTGATGAGAAGTGGCATTTTGAGTTGACGCCCATACACCTGCAAGGGTCACTGGGATTAATGCAGGAGTCTGGTAACCTCAGGTACGCTCACAGGATTACAACCGTAATCAGGTCAATCGTTTCTGTCTGCACTTAAAGCCAGAGAGCAAGATGACCTTCCCAGTGTCAGAATCACATCTATGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21820 True 1473 lncRNA 0.37 2 11756597 11758207

Neighbor

gene id symbol gene type direction distance location
CI01000001_11656975_11660666 TARDBPL, TARDBP coding upstream 94731 11656029 ~ 11661866 (+)
CI01000001_11440491_11445508 NA coding upstream 311057 11439979 ~ 11445540 (+)
CI01000001_11431153_11431434 NA coding upstream 325010 11429876 ~ 11431587 (+)
CI01000001_11359106_11376288 NA coding upstream 379712 11359106 ~ 11376885 (+)
CI01000001_11265638_11283027 MASP2 coding upstream 473361 11265638 ~ 11283236 (+)
CI01000001_11809724_11812692 LZIC coding downstream 51220 11809427 ~ 11813444 (+)
CI01000001_11898621_11898914 NA coding downstream 140090 11898297 ~ 11900188 (+)
CI01000001_11990189_11991073 AURKAIP1 coding downstream 229870 11988077 ~ 11991195 (+)
CI01000001_11994138_12003906 NA coding downstream 235931 11994138 ~ 12004100 (+)
CI01000001_12006266_12048809 DVL1A, DVL1B, DVL1 coding downstream 247721 12005928 ~ 12049045 (+)
G19362 NA non-coding upstream 65988 11689925 ~ 11690609 (+)
G19351 NA non-coding upstream 68922 11682557 ~ 11687675 (+)
G19394 NA non-coding upstream 75651 11680707 ~ 11680946 (+)
G19349 NA non-coding upstream 85602 11668964 ~ 11670995 (+)
G19312 NA non-coding upstream 256083 11500217 ~ 11500514 (+)
G19358 NA non-coding downstream 36597 11794804 ~ 11797310 (+)
G19353 NA non-coding downstream 56307 11814514 ~ 11814714 (+)
G19435 NA non-coding downstream 72325 11830532 ~ 11831123 (+)
G19438 NA non-coding downstream 94147 11852354 ~ 11876252 (+)
G19488 NA non-coding downstream 128741 11886948 ~ 11887201 (+)
G19395 NA other upstream 74780 11681322 ~ 11681817 (+)
G19314 NA other upstream 197924 11501194 ~ 11558673 (+)
G19039 NA other upstream 902614 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1216751 10538388 ~ 10539846 (+)
G18937 NA other upstream 1280208 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1755197 13514115 ~ 13517063 (+)

Expression


Co-expression Network