G19358


Basic Information

Item Value
gene id G19358
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11794804 ~ 11797310 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21760
CTTTTTTTATATTAAAAAATAAAATAAAATAATGGAAATCTATCAAGTTTATAACCTTGTTGGTTCCCTCAAATTATCAATGTTAAAAGCAGCTGTGCTGCTTAATATTTTTCACGAAAACAGTAATAATAGACAATTCAAAAGAACAGCATTTATTTGAAATAAAAATATTTTGTAACATTATAAATGCCTTTACTGTCAATTTCGATCTTTAATGCATCCTTGATGAATAAGTATTAATTCTTACTGATCTTACTATTTTGGATGGATCTTTATCCAGTCTTTTTCGAATTATAAAGTCACCATAGCACTTACCAGAGGCCCCCATAGGAGAAGTAGCAGGGGTGACATTTTGGGCATTTAGGCCCAGAGAGTGAGATGGAGCTGGTGGGACAGGCTGCGATGAAGCCCCAGATGGCCCTGGCAAGGGTCCTGGGGGAGTCTCTCTCTGTGGGGATGTCAAAGGGGTGCTGAGGGGTGTGCTGGGCTGTGATGTCTGTCCTCCGGCTAACCGGGCCAGCCGCCTTCTTCGAATCTCTTCAGGACTGAGCTGCTCCATTGCCTTTCTTTTAATTTTCACCTTAATTATGTTGCTAGCCAGTCAGCTAGCTTCCTTATAAACACCAAAAGTGCATAGTCTGAACCATAAAACAAATATCGATGAGCTGTGATTGTCTGATTCAAATCTTTATATTAAAACATCAAACGCGCGTGGCTGTTTTTTTCCGACCGGGAAGCGTTATCTTCGGATTCTGTTAAGAATGAAACAAACACAAAAGTATTATTCGTCAAAACACCGACGCGGCCATTTTGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21760 True 815 lncRNA 0.45 2 11794804 11797310

Neighbor

gene id symbol gene type direction distance location
CI01000001_11756218_11760009 NA coding upstream 33307 11756161 ~ 11761497 (+)
CI01000001_11656975_11660666 TARDBPL, TARDBP coding upstream 132938 11656029 ~ 11661866 (+)
CI01000001_11440491_11445508 NA coding upstream 349264 11439979 ~ 11445540 (+)
CI01000001_11431153_11431434 NA coding upstream 363217 11429876 ~ 11431587 (+)
CI01000001_11359106_11376288 NA coding upstream 417919 11359106 ~ 11376885 (+)
CI01000001_11809724_11812692 LZIC coding downstream 12117 11809427 ~ 11813444 (+)
CI01000001_11898621_11898914 NA coding downstream 100987 11898297 ~ 11900188 (+)
CI01000001_11990189_11991073 AURKAIP1 coding downstream 190767 11988077 ~ 11991195 (+)
CI01000001_11994138_12003906 NA coding downstream 196828 11994138 ~ 12004100 (+)
CI01000001_12006266_12048809 DVL1A, DVL1B, DVL1 coding downstream 208618 12005928 ~ 12049045 (+)
G19411 NA non-coding upstream 36597 11756597 ~ 11758207 (+)
G19362 NA non-coding upstream 104195 11689925 ~ 11690609 (+)
G19351 NA non-coding upstream 107129 11682557 ~ 11687675 (+)
G19394 NA non-coding upstream 113858 11680707 ~ 11680946 (+)
G19349 NA non-coding upstream 123809 11668964 ~ 11670995 (+)
G19353 NA non-coding downstream 17204 11814514 ~ 11814714 (+)
G19435 NA non-coding downstream 33222 11830532 ~ 11831123 (+)
G19438 NA non-coding downstream 55044 11852354 ~ 11876252 (+)
G19488 NA non-coding downstream 89638 11886948 ~ 11887201 (+)
G19489 NA non-coding downstream 90158 11887468 ~ 11887883 (+)
G19395 NA other upstream 112987 11681322 ~ 11681817 (+)
G19314 NA other upstream 236131 11501194 ~ 11558673 (+)
G19039 NA other upstream 940821 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1254958 10538388 ~ 10539846 (+)
G18937 NA other upstream 1318415 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1716094 13514115 ~ 13517063 (+)

Expression


Co-expression Network