G20588


Basic Information

Item Value
gene id G20588
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11888512 ~ 11889125 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU23143
GTCTTACGGGTGTGGAACGGCATGAGGGTGAGTAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAATTATTTATTTAAAATTGGCATATAATTGGCCATAATTCTGTGTGTTCCTATTTGTCATATTAGTATGTGTGTGTGTGTAGAGAGAGAGTGTCATGGTCAAAATAATTGGCACCCTTGGTAAATATGAACAACAAAAAAACAGTGAAAATAAATCGGCATTGTTTTTTTTTTTAATTCACAAAAAATCGTACCTTTTATTTAAGTAAAAGAACTGAAAATGGGCAGGGCGAATCTCTTCATGAAATGTTTTTCTCCAATACACGTTGACCACAATTAATGGCACCCTTTTATTCAATACTTTTTGCAACCTCCTTTTGCCAAGAAAACAGCTGAGTCTTCTTCCATAATGCCGGATGAGATCACAGACCATTCCACCGTACAGAATCTCTCCAGATCCTTCAGATTCCCAAGTTCATATTGACTGTCCTCTTCAGTTTTCTATAGTGTTCAGGTCAGGGGACTGGGATGGCCATGGCAGAAGCTTCATTTTGTGCTCAGTGACCCATCTTTGTGTTGTTTTTGATGTTTGAAGATCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU23143 True 614 lncRNA 0.41 1 11888512 11889125

Neighbor

gene id symbol gene type direction distance location
CI01000001_11822308_11849165 CLSTN1 coding downstream 39347 11822018 ~ 11849165 (-)
CI01000001_11802690_11807444 NMNAT1 coding downstream 81068 11802565 ~ 11807444 (-)
CI01000001_11798501_11800359 RBP7A coding downstream 86916 11797857 ~ 11801596 (-)
CI01000001_11768247_11795338 UBE4B coding downstream 93174 11768072 ~ 11795338 (-)
CI01000001_11715436_11736738 KIF1B coding downstream 151774 11715112 ~ 11736738 (-)
CI01000001_11906787_11948732 PIK3CD coding upstream 17649 11906774 ~ 11949296 (-)
CI01000001_11953793_11954834 FOXL2 coding upstream 64427 11953552 ~ 11955605 (-)
CI01000001_11957291_11972213 TMEM201 coding upstream 67467 11956592 ~ 11972549 (-)
CI01000001_11973849_11984738 S2533, SLC25A33 coding upstream 84048 11973173 ~ 11985134 (-)
CI01000001_12064801_12077571 NA coding upstream 175676 12064801 ~ 12077571 (-)
G20501 NA non-coding downstream 54631 11833608 ~ 11833881 (-)
G20496 NA non-coding downstream 206759 11681260 ~ 11681753 (-)
G20494 NA non-coding downstream 224688 11663575 ~ 11663824 (-)
CI01000001_11385404_11386042 NA non-coding downstream 501175 11383448 ~ 11388934 (-)
G20276 NA non-coding downstream 605161 11267587 ~ 11283351 (-)
G20593 NA non-coding upstream 101058 11990183 ~ 11991216 (-)
G20596 NA non-coding upstream 102547 11991672 ~ 11991913 (-)
G20599 NA non-coding upstream 116695 12005820 ~ 12006022 (-)
G20528 NA non-coding upstream 160453 12049578 ~ 12051816 (-)
G20315 NA other downstream 767682 11116755 ~ 11120830 (-)
G20319 NA other downstream 773765 11110837 ~ 11114747 (-)
G20230 NA other downstream 859735 11022127 ~ 11028777 (-)
CI01000001_10862471_10864514 NA other downstream 1023592 10862225 ~ 10865770 (-)
G20136 NA other downstream 1348662 10539027 ~ 10539850 (-)
CI01000001_12878462_12899012 NA other upstream 984273 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1031474 12920599 ~ 12925496 (-)
G20555 NA other upstream 1452864 13341989 ~ 13348146 (-)

Expression


Co-expression Network