G20507


Basic Information

Item Value
gene id G20507
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11890305 ~ 11892156 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU23058
GCTCTTGAGTCACTCCAGCGCTGCCGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTTATACACAACACAGCTCTCAAATACAACAAAAACGACAGAATCCTGGACCAGGAGAGCAGTGCGTCAGGAGCAGGGGGGATGAACCGAGAGGAAGCCCCTGGCAAGTCTCCTGAGGAGATGTACATCCAGCAGAAGGTGCGGGTGCTGCTCATGCTCAAGAAAATGGGATCAAATCTGACACCAAACGAGGAAGCTTTTCTGCGGAATTATGCAGGCGTGGTGCATAGCCAGATGAGTCAGTTGCCACAGCACCCTATTGACCAGGGAGCCGAGGACGTGGTGATGGCCTTCTCGAGATCAGAGACCGAGGACAGGAGACAGTGACCTCTCGCCATGCCGAGTCACTACAGCTGAACGCAACACAACACTGTTGACCGATGGAGAGGGCGGAGCCTGAGACAGGAGAGGGGCGGGGCTCTGCTGCATGCCAGTTGCCCCACTTCCCTTCTCTTCCCCATTTCCCTCTTCTTCCTCACACTAACTGTTACACTATCGGGCCCTGTGGCCGCACTACCTGGTGACTTACAGCAAACCAGTCAGAAAGAGTCCTGGCGGGTAAATGTTTGATTTGGGTTTTTTAACTTTCTTTTCTTTTTTTTCTTTTTGAATCATGCTTCCGTAAAGTGGCGTTTTATATTTGTTCCCATGAGAGACTTAATGGACCAAGAGCTTCATTTGTCTGGTCAAACTACGAAAAAATATAAATCGCCTTATGGGTTGTTATTACAGACATTTTTTTTTTTTTGTGTGTGTGTGTATGTAGTTTTATTGTCTACAGGATCATGCAGGTAGATTTTTTTTGTTTGTTTGTTTTCTTTATTTTCAGGGTTTTTGATTGTTTAGTAGTTGTTCGCATCATAATTTCATCCAAATAACATTCATGTTGTTGTGGAGGATACCGAGGCCCGTACACAAGCACACACTCACAGAATGATGTACACGAATGACCTGATGTTTCATGATCTGTTTTTTCGATGTTTGGATTAATGTGAAATTTCATAGATTTTTTTTGTACAGAACGTGAGAAAAAAGTAGAAAAGTGAACGAGTTGTGCCAACCGTGTTTTTATGTAAAATATTTCTAAAGGTATCTAATGAATGTCTTAGGTCCTTATTTATTTTTTCAATGTCTTAAAATGTAGACAAACACAAACCCCTTTTAAACTTCGATTCTGATTTGTAACCGCATGTTTTTAATACGAATGACTTTAGAAACCTTAATAACCACAAATTTACGTCAAATGGAAAATCTCAGCCTTAAGCGTCGCAACAGGATGTGCCGTGCTCAGACGTGAGTATGTGGCACCGTATATTCGACTGTCTGATTCAGTGGTGCTAGTGAAACACGTTTAGTTATTTTAATTGACGTTGAAGATGAATATGAGCTTGTGTTAATTCAGAGGACGCTAAACGTCCCACAAACCAAACTTTTTCCAATTTGATTTCGTGTTTTGGCCTCTGACCTTTTTGGTAACATTATTTCATGTTCAGTATTTAAAGCGTATTCATGTTTTGTTAACTTGCTTATTGTGTCTTAGTGTTTTGAAATGACGCATGCCTGCATTGTGATCTACGGTGTATATGTTCAAGTAGCTCTGTAATGGTCACGAGAGCCTCAATGTACACCTCTTTTTAATCTGTGGATGTAAGTCCTTTTATGGAAATGGCTTTTATAGTTCTCGCTAATATCAGCAATAAGTATTTGATTGAATGTGTTCAGTCATTAAGGCTACTTATCCATGCGACAGCCGCATTATCTCACCAATGACAGGAACGTGCATCTGGTTGCTTTTAACTGTTTTGTCTATGCATTGTTTCTTAACATCAGAATCATACAATCGTGTCTTACATGCACTCGTTTCAGGTTGGGTTTGTGGCCTTTCAGCTTTGCATCCATATGAATGTCACTCTGGATTCTTGTTTAATTCATTGACTTCATTGCATGTTGTCCATACTCGCTTGAGCTGTTAAACTATTTAATGTGAATTGCTTTTTTTTTTTTATTGTTTTAAAATTCAATTGAATGAATGTTTTTTTTGTTCTGTTTTTCCCCCCCCCCTTATGGCCGTCAACCTCGTCCCTTGACTTAAATGCGTCCAAAATCTATACCAACTGAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU23058 True 1852 lncRNA 0.41 1 11890305 11892156

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022441 ctnnbip1 coding NC_007134.7 CM002907.2 29711569 ~ 29751730 (-)
bowfin (Amia calva) G122126 ctnnbip1 non-coding CM030136.1 CM030136.1 9862956 ~ 9898880 (+)