G19473


Basic Information

Item Value
gene id G19473
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12054928 ~ 12055598 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21887
AGTTTCTGACCTGACGAGGGAAGAACAACAGCACGACCAAGGTTAGACTCTTGCGAGTAAACCTTTCACCGCACAGATCTTCAAGCAGCCCAACTGCTTCTGCAGAGGACTTTGACTCCCGACCTGCATTACTCAAGTACCTCCAACCTACAGAAGATCCTATGGATCAACCACCATCTGACCTACAGTTCTCTGGATTGCACAAAGGCCTCAGTGCAGCTCTGCAGCTGTTGGAAAGCAATCCAGTCTCCCACTGCACACGGAAGGATACCAGTGGACAACATTTCCCATTCCCGGACTGATCACCTGACCAAGTGAATCGTAAATATAAGCTAAGCTAACCAAACCTTTTCCCAAAGGCCGTGGCATTAGGTTGTTGCTAAATAAGATTGCTATTTGTGTAGAGACTGTTTATCTAGGGTCAGCGCACACAGATAGATACATTAGACACGTTATCTGTATTCATAGTAAATGCTTATTTGTTATTTTTAATACCAGCATCCAGAAAGACCACAATTGACTCCCTCATTGACTGCTAATTACCCTTTCATTGCTTCATCCAATCCATTGCTCATCTACTTGGCATTCAGTTGTGTTGACATCCATTTGTGTTGTAGTTTCTGATTCAATTTTCTTAGTAGTTTAGTCATTTTCCTTCGCAGTATTTAGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21887 True 671 lncRNA 0.43 1 12054928 12055598

Neighbor

gene id symbol gene type direction distance location
CI01000001_12006266_12048809 DVL1A, DVL1B, DVL1 coding upstream 5883 12005928 ~ 12049045 (+)
CI01000001_11994138_12003906 NA coding upstream 50828 11994138 ~ 12004100 (+)
CI01000001_11990189_11991073 AURKAIP1 coding upstream 63733 11988077 ~ 11991195 (+)
CI01000001_11898621_11898914 NA coding upstream 154740 11898297 ~ 11900188 (+)
CI01000001_11809724_11812692 LZIC coding upstream 241484 11809427 ~ 11813444 (+)
CI01000001_12058281_12060612 NA coding downstream 2157 12057755 ~ 12061261 (+)
CI01000001_12088244_12091260 NA coding downstream 32569 12088167 ~ 12091494 (+)
CI01000001_12280407_12327837 NA coding downstream 223173 12278771 ~ 12327954 (+)
CI01000001_12486765_12495297 DCJ11, DNAJC11A, DNAJC11 coding downstream 429948 12485546 ~ 12495518 (+)
CI01000001_12503839_12514653 ASXL1 coding downstream 447930 12503528 ~ 12515328 (+)
G19512 NA non-coding upstream 62553 11992032 ~ 11992375 (+)
G19469 NA non-coding upstream 87559 11907617 ~ 11967369 (+)
G19490 NA non-coding upstream 166418 11888104 ~ 11888510 (+)
G19489 NA non-coding upstream 167045 11887468 ~ 11887883 (+)
G19488 NA non-coding upstream 167727 11886948 ~ 11887201 (+)
G19538 NA non-coding downstream 53965 12109563 ~ 12481405 (+)
G19548 NA non-coding downstream 88022 12143620 ~ 12144142 (+)
G19621 NA non-coding downstream 249415 12305013 ~ 12369030 (+)
G19673 NA non-coding downstream 467075 12522673 ~ 12538554 (+)
G19697 NA non-coding downstream 490352 12545950 ~ 12546380 (+)
G19395 NA other upstream 373111 11681322 ~ 11681817 (+)
G19314 NA other upstream 496255 11501194 ~ 11558673 (+)
G19039 NA other upstream 1200945 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1515082 10538388 ~ 10539846 (+)
G18937 NA other upstream 1578539 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1457806 13514115 ~ 13517063 (+)

Expression


Co-expression Network