XLOC_006860 (CNNM1)


Basic Information

Item Value
gene id XLOC_006860
gene name CNNM1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40462366 ~ 40499296 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013191
TGTTTATATATACGTCCAAGAGGCTTACAGTAGCTACATTATATCATCATCTCTGTCTGTGCAGTGCATCAACATTTCCTGTTACAGTATCGCAGCCCCGCAAAGCGCCATGACGTCACTGCGgtgtcatttttatttacacGAGACACCAGCTGTTACGTTGACTCGGCAAACAGAGtggatgagagtgtgtgtgtgtccgtgggTGTGTGTCATTGCCACGTGATCCAGCTCGCCAATGTCCTTTTACAACCCACTCAGCATCATGGCTGCGGATGCTGCGGATGCTCTCCTCCCGCACCGCATCCCCGGACCATGCCTGCTACCCCTGCTGCTCCTGCTCGCCTCCAATCTCCCTTCACTGAGCCACGGACTGCTGGGCTTCCGACCGGAGGACACGGGAAGAGATCTGTCCGTGCAGGACGGGGTGCTAAAGGCCACCGAAGGGACGCGGTTCATGTTACGCGTGTACTATGCAGCATCCCCGCAGAGGATCAACCGGACCGTCAGCAGCGCAGCCGCACCGTGGATCGCCTTCATCGAAGAACCGGAGCCGGGCAGAGAGGGGCAGGTGCACCCCAAACGCAACTTATGCGTGGAGGAGAGCGCCAGGAGCTCGGATATTGAGCTTCTTGGGTCGTTTAAGTCAGCCTCAAGCCAAAACTCCATACTGGTGGAGCTTCTCGCCAAAGAACTCCGGAGAGGAGAGAACATTAAGTATTACTCCATGTGCGCCTTTGACGGGATCAAATGGGAGCATTACCGGACACGCGACTTCTGGCTGGCGGTGGTGGAGCGGCCGCAGCATACGGACGGGTGGCTGCAGGCGGGTCTCTCAGTGCTGTTGCTCGCGCTGTCCGCGCTTTTCAGCGGGCTGGTTATCAGCATGCTCGCGCTGGACCCGGTGGAGCTCAAAGTGCTGCAGAACAGCGGCACGGACAAGGAGCAGAAGTACGCGCATAAGATCGAATCAGTGCGCAAGCATGGCAACTATGTCCTGTGCACCTTGGTGCTGTGCAATGTGCTCACTAACACTTTCTTGGTGGTCTGGATGTGCCAGATCCTAGGAGTGACGCCCGTTTCTACTGCGGCGTGCACTTTTCTCATCTTCTTCATCGGAGAGATCCTGCCGCACTCTGTCGCATCCAGGCACGGCTTGGCAATCGCGTCCAAAACCGTGTGGCTGACCAAGATGCTGATGCTGCTGACTTTCCCCATCACCTATCCCATCAGCAAGCTCCTAGACAACATGCTGCACCAGGAAATCAGCAACTTCTACACGCGTGAGAAGTTACTGGCTATGCTGAGAGTCACTGACCCGTATCATGACCTGGTGAAAGAGGAGCTGAACATCATCCAGGGAGCTCTGGAGCTCAGGAGCAAAACGGTGGAAGATGTGCTGACCCCTCTCAATGACTGCTTCATGCTAGCCTCGGACGCCGTCCTGGACTTTTACACCATGTCGGACGTGATGCAGAGCGGATACACTCGCATTCCAGTGTTTGAGAACGAAAGATCCAATATTGTTGATATTCTGTTCGTCAAAGATCTGGCTTTTGTTGACCCAGATGACTGCACGCCGTTAAAAACCATCACTCAGTTCTACAAGCACCCGCTGCACTGTGTGTTTAATGACACCAAACTGGATGCAATGCTGGAGCAGTTCAAGAAAGGGAAATCTCATCTGGCCATCGTACAGAGGGTCAATAATGAAGGAGAAGGAGATCCTTTTTATGAAGTCATGGGCATCGTCACTCTGGAAGACGTCATCGAGGAGATCATCAAGTCCGAGATTGTGGACGAAACAGACCTCTACActgatAACCGTACAAAAAGGAGAGTGTCTCACCATGAAAGGAAACTACAAGATTTTTCCATATTTAAGCTGTCAGAGAGTGAAATGAAGGTCAAAGTTTCACCACAGCTTCTGCTCGCCACACATCGCTTTCTGGCCACAGAAGTCGAGCCTTTTAAGTCGACTCATCTGTCAGAGAAGATCCTCCTGCGACTGATAAAGCACCCCAGTGTTGTGCAGGAACTCAAGTTTGATGAGAAGAACAAGCGCTCACCAAAACACTACCTCTTCCTGCGCAACAAGCCTGTCGATTACTTCGTCCTCATACTGCAGgGTCGGGTTGAGGTCGAGATTGGTAAAGAAGGCTTAAAGTTTGAAAATGGCCCGTTCACATACTATGGTTTACCTGCTGTCATGACCATCCTACCCACAGtCCACAGATCCCCATCCCGGAGCAGCGGTCTCAACCATTCAGATACCACCATTCATGGAGGTAGTTTGGGTCAGCTGAGCATCAGCGGAGGACCGTATTTACCAGACTATTCAGTTCGCCAGCTCACAGACCTACAGATCATTAAGATCACTCGTAATCATTATCAGAACGCACTGACAGCGACGCGCATGGACAGCTCTCCACAGACCCCAGACGCAGACAGTCACGCAGCCGGAGAAAGAATGACAATCCCGGAAACTCGCTCCAACAGCATCGCCCTCCCTCTGACCGAACCACGGCCCTGTCTGACCCGCTTCCACCAACACATTCACCTCTACAGACAACCAGACAGCACCAGCACGCTCAACGAGAGGAACTGCATCGTCCGAAGTAAGTCAGATGGACAGAAGAGCCCCAGTGACTCTGTGTTTCTGCGAATGGACGACATCCCATACATAAGAGACAGTCCAGTGGAGAGAAAAGAAGGAACCGATGCTTCTGCTGGATCAGTGGAGACAGATCTGTCTACATCCCAGCTTATCAGTTCTCACTCTCTGGGAGGTTCGGATGACAACCTCGGGAAAAAACTGCTGCGGAAACTGAGCAACAAAAAGAGAAAGAAGTCTCGAGATGGAGACAAACCTTTGGAAGACAATCCTGAACCCTCACAGGTGAAGACCTAGCATTCGGCGAATGGGTTTGCTTCTCTCGCTCCCGCTTCTCCCACAAAATGTGAAATCTCCTCCAGCCTTCCTCTGGATATCGAGTGAGAGAAAGCACAACCCATTGTACACACAGACCAACAGATGTAGCATCATTAAACCTTGCCTTCAGCATTGATGAAGCCAACAGGAATACACCAAACATGCAGCAGGACGCACGTTTTCATAATTGATGGTGGTTTGTGATGATGTCATCAACAGTCACTGTGGTAAAGACATTCTGATCTCTGACCCGGGCAAAGCCAGCAAGCACAAGCCCGGAAACCTGAAGCCAACAGTCTGACCGATGAGAGGACAGATCAGAAAATGCGCATCTTTCAGTACAATTATATATCTAACAACGTGTTTACTGTGTGATTTTATATCATATTAATGGAGAGGAATATGTCAGGCTGTGCCTGGAAATCAATCAAGATGAATTTATGGATATCAAAGCACTTTGAGACAGATCAGACCCATTTACTTCATATTCTGTTGAATAGCTAATGtgctgacagaaaaaaaataccTATATTAGGTAAGCGCTGTCAGATTTTTTTCCTTCTCTAACTTCTGTTTTCAACAGAATgcatatattttatgttgatttcTTATCGTTTTGCTTTTATTTGAGCCCTTCCGTTTGGCTGAGAGCACAGGGTACAAAGTGATGTGACTTGTAttatttgatctatttttaaaaaatagccaGAGTGCTGGAAGTCCAAGCACATGTATCTGAGAATAGATTTATTTGTCTAAAATGAATAGCATTTATTATATCAGCATGCGTTTTCTCAAACagcagtattattattagtagaacAGCATTGTGTTTACTGTATGACATGTAGTTAGGATATGCGCAAGCCATAACTTGAACAAACTTGAAGCATTGATATTAAAATGTCACctcagaaatataaatatatataaaccataAGCAATATCCAAAACACGCAAGAAgcctattattttgtttaaagcccttatgaaactgaaaaaatatagaaaacttAGTAATTTGCTGCAAGTCGCTTAAAAACTCATTCACATTTCACTTCATGGGAATGCTGCTATATATGTGAATTTCATCTTTTCATACTTCCTGTAAATTAGAGCCTTTTTTGGCATGTTTACACTACCTTTCAAAAGTTTAAGATTGGTAAGATTTCATaaagaaattaatacatttattcaataaggatataataaatcaattaaaagtaATGGCATAgacatttcaattttaaattaacGCTGCTCCTTTTTTGTTATATACACTACATTACAAAAGTCTTGCCGTAGAtcgcagttgtaagagcaacaaataataacttgacttcaagttgaaacatcagttgaactgcatccctatcatc

Function

symbol description
cnnm1 Predicted to enable transmembrane transporter activity. Predicted to be involved in ion transport; magnesium ion homeostasis; and transmembrane transport. Predicted to be located in dendrite and neuronal cell body. Predicted to be active in intracellular membrane-bounded organelle and plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078087

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013191 True 4311 mRNA 0.47 10 40462366 40499296

Neighbor

gene id symbol gene type direction distance location
XLOC_006859 NA coding downstream 43058 40418316 ~ 40419308 (-)
XLOC_006858 nkx2.3 coding downstream 50449 40409215 ~ 40411917 (-)
XLOC_006857 nkx3.3 coding downstream 60496 40397517 ~ 40401870 (-)
XLOC_006856 pyroxd2 coding downstream 145999 40284872 ~ 40316367 (-)
XLOC_006855 zgc:123010 coding downstream 179596 40247379 ~ 40282770 (-)
XLOC_006861 st3gal7 coding upstream 217023 40716319 ~ 40726865 (-)
XLOC_006862 morn4 coding upstream 246985 40746281 ~ 40754499 (-)
XLOC_006863 NA coding upstream 462439 40961735 ~ 40977410 (-)
XLOC_006864 NA coding upstream 512536 41011832 ~ 41114062 (-)
XLOC_006865 si:dkeyp-86d6.2 coding upstream 625298 41124594 ~ 41546779 (-)
XLOC_006471 BX537274.2 misc downstream 30197461 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 39636141 825904 ~ 826225 (-)
XLOC_006850 NA non-coding downstream 957873 39499592 ~ 39504493 (-)
XLOC_006848 BX324188.2 non-coding downstream 1219694 39242555 ~ 39242672 (-)
XLOC_006846 BX323574.1 non-coding downstream 1609114 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 1842647 38613225 ~ 38619719 (-)
XLOC_006866 BX548002.1 non-coding upstream 730997 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 1163676 41662972 ~ 41663088 (-)
XLOC_006868 CT583720.1 non-coding upstream 1345657 41844953 ~ 41845067 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_02507678_02521107 CNNM1 coding CI01000012 null 2507678 ~ 2521107 (+)