XLOC_006863


Basic Information

Item Value
gene id XLOC_006863
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 40961735 ~ 40977410 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013502
ATGAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGACACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGATGGAACTTATTTCCCATTCTTATATATCTGATGCATGAGGGTGATTTGTCCATGGGTCAGCActtttcttctgggtgctctttTGAGTGTGATGCTCCTCTGGTAAAGCTGGATGGTTTTTACATTAATGGAGGTAAATAATAATGTATTGGCCTTGAGGTGTTTCCTGTGCTCTCTTGTTAAAGAGAATTGGGGGTGAAGTTCATTACACCTCTAGAATATGCAGGTCATAtttcttaaaattgtttttttttttttttttttttttttacttttaattacattttataagtTAACACTTTAAATGTCACATCAACTGGTGGACATTTTGTACATATAGTTTA
>TCONS_00013503
ATGAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGACACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGGCCATTGGAAAACCACACAGCCACAATGAAGATGGGAATCCTTGAAACAGaacgcagcagcagcagcatgaaCTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGACTTTATCAATGCATCTTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGAAGTTCCTCTTGAagatttctttttcacttttcttgaaacttttgtgagttttttttttctgttctggaaTCATCTGTCAACTAGGTAAAGTAACCCATTGTTTAGATTTGATggtgtttttgacattttaatattcatttattaattttccttcagcttagtctcgtGTTTAtcagggggcgccacagcggaatgaaccgttcatttttatatgcaaatatattaaatgtttaatgttaatgaatgggtttaaccattaaaaatgtgatttcataAGTTCAGATTATCTTTTGTAGAATGAAAGTATTCAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgctgtttttttattttatttacatttttgcatataTTTGGGATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcacgtaagagcaggcgcagccatttgagtctttttggcttgagatttccgctctcattcacttccattgatttttagacgttaaaacagcttgttatgatgcttaatgttgcaaactgatattttcttattatattattctgctttgtctgtagagtcataaacacactagtttgtagagcaagtagtttgtctgttttctgctgtttattattgttagtcatttctcccatagggctCTGAATCAGATGTTCTAAAACAAATCGCAAAGACGAGGGCACTTCCACCTTAAAGAATGAGGTCAATATCAGGAGAAATGAACATGCTAGAATTTATACGGTACACTTTGTtgaaatgtgtaatgtatttgttattcTAATGTACTTTTACAATAGTGT
>TCONS_00013504
ATGAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGACACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATGGGCCATTGGAAAACCACACAGCCACAATGAAGATGGGAATCCTTGAAACAGaacgcagcagcagcagcatgaaCTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGACTTTATCAATGCATCTTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGAAGTTCCTCTTGAagatttctttttcacttttcttgaaacttttgtgagtttttttttctgttctggaaTCATCTGTCAACTAGGTAAAGTAACCCATTGTTTAGATTTGATggtgtttttgacattttaatattcatttattaattttccttcagcttagtctcgtGTTTAtcagggggcgccacagcggaatgaaccgttcatttttatatgcaaatatattaaatgtttaatgttaatgaatgggtttaaccattaaaaatgtgatttcataAGTTCAGATTATCATTTGTAGAATGAAAGTATTTAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgctgttttttttttttttttttttttttgcatttttgcatttatttgggATATATATTAAGTACACTTCAGCTctatgtattgaccttattcctcacgtaagagcaggcgcagccatttgagtctttttggctcgagatttccgctctcattcacttccattgatttttagacgttaaaacagcttgttatgatgcttaatgttgcaaactgatattttcttattatattattctgctttttctgtagagtcataaacacactagtttgtagagcaagtagtttgtctgttttctgctgtttattattgctagtcatttctcccacagGGCTCTGAATCAGATGTTCTAAAACAAATCGCAAAGACGAGGGCACTTCCACCTTAAAGAATGAGGTCAATATTAGGAGAAATAAACATGCTAGAATTTATACGGTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013502 False 427 lncRNA 0.35 2 40961735 40977410
TCONS_00013503 False 1191 lncRNA 0.35 2 40965996 40977410
TCONS_00013504 True 1143 lncRNA 0.35 2 40970806 40977410

Neighbor

gene id symbol gene type direction distance location
XLOC_006862 morn4 coding downstream 207236 40746281 ~ 40754499 (-)
XLOC_006861 st3gal7 coding downstream 234870 40716319 ~ 40726865 (-)
XLOC_006860 CNNM1 coding downstream 462439 40462366 ~ 40499296 (-)
XLOC_006859 NA coding downstream 542427 40418316 ~ 40419308 (-)
XLOC_006858 nkx2.3 coding downstream 549818 40409215 ~ 40411917 (-)
XLOC_006864 NA coding upstream 34422 41011832 ~ 41114062 (-)
XLOC_006865 si:dkeyp-86d6.2 coding upstream 147184 41124594 ~ 41546779 (-)
XLOC_006866 BX548002.1 coding upstream 252883 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 coding upstream 685562 41662972 ~ 41663088 (-)
XLOC_006868 CT583720.1 coding upstream 867543 41844953 ~ 41845067 (-)
XLOC_006471 BX537274.2 misc downstream 30696830 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 40135510 825904 ~ 826225 (-)
XLOC_006850 NA non-coding downstream 1457242 39499592 ~ 39504493 (-)
XLOC_006848 BX324188.2 non-coding downstream 1719063 39242555 ~ 39242672 (-)
XLOC_006846 BX323574.1 non-coding downstream 2108483 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 2342016 38613225 ~ 38619719 (-)
XLOC_006869 NA non-coding upstream 888759 41866169 ~ 41869392 (-)

Expression


Co-expression Network