Gene
RNA
| Item | Value |
|---|---|
| gene id | G19826 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 12935747 ~ 12942304 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU22269 | True | 1286 | lncRNA | 0.42 | 8 | 12935747 | 12942304 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_12926362_12928572 | RPS12, RGD1561102, RPS12-PS2, RPS12P4, GM4925, RPS12.S | coding | upstream | 7168 | 12925414 ~ 12928579 (+) |
| CI01000001_12912442_12919516 | SH3BGRL2 | coding | upstream | 15756 | 12911614 ~ 12919991 (+) |
| CI01000001_12873759_12874041 | NA | coding | upstream | 61658 | 12873448 ~ 12874215 (+) |
| CI01000001_12814416_12815426 | IRAK1BP1 | coding | upstream | 120303 | 12814336 ~ 12815444 (+) |
| CI01000001_12718151_12726821 | TBX18 | coding | upstream | 208413 | 12717924 ~ 12727334 (+) |
| CI01000001_12991367_12993048 | NA | coding | downstream | 48972 | 12991276 ~ 12993443 (+) |
| CI01000001_13002416_13005974 | NA | coding | downstream | 59910 | 13002214 ~ 13006033 (+) |
| CI01000001_13011184_13014251 | TBPL1 | coding | downstream | 67115 | 13009419 ~ 13014262 (+) |
| CI01000001_13160253_13167224 | MYB | coding | downstream | 217949 | 13160253 ~ 13168505 (+) |
| CI01000001_13220895_13223877 | ARMC1L | coding | downstream | 278591 | 13220895 ~ 13224370 (+) |
| G19825 | NA | non-coding | upstream | 5540 | 12929812 ~ 12930207 (+) |
| G19758 | NA | non-coding | upstream | 11546 | 12921005 ~ 12924201 (+) |
| G19813 | NA | non-coding | upstream | 51758 | 12883783 ~ 12883989 (+) |
| G19769 | NA | non-coding | upstream | 58656 | 12874810 ~ 12877091 (+) |
| G19796 | NA | non-coding | upstream | 100586 | 12831908 ~ 12835161 (+) |
| G19910 | NA | non-coding | downstream | 45879 | 12988183 ~ 12989922 (+) |
| G19885 | NA | non-coding | downstream | 48289 | 12990593 ~ 12991125 (+) |
| G19923 | NA | non-coding | downstream | 125744 | 13068048 ~ 13068268 (+) |
| G19924 | NA | non-coding | downstream | 126468 | 13068772 ~ 13069012 (+) |
| G19932 | NA | non-coding | downstream | 144017 | 13086321 ~ 13086557 (+) |
| G19395 | NA | other | upstream | 1253930 | 11681322 ~ 11681817 (+) |
| G19314 | NA | other | upstream | 1377074 | 11501194 ~ 11558673 (+) |
| G19039 | NA | other | upstream | 2081764 | 10850924 ~ 10853983 (+) |
| CI01000001_10538498_10539667 | RPS26 | other | upstream | 2395901 | 10538388 ~ 10539846 (+) |
| G18937 | NA | other | upstream | 2459358 | 10474984 ~ 10476389 (+) |
| CI01000001_13514115_13517063 | NA | other | downstream | 571100 | 13514115 ~ 13517063 (+) |
