XLOC_006869


Basic Information

Item Value
gene id XLOC_006869
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 41866169 ~ 41869392 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013881
cagatgcagaaacttttgacatatgaattcatcttgactaagggtaatgtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactGTCTTTTAATAAAGAACTCTTCACAGCACTGCAGCTAAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTTCAGATCAGTGCTGAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGGTAAgtcatagttttattaatttttttattttattgcaacactAAGTAGTCCATTCAGTGGCCAAAATGATATAAAGGGCCTAAAATGGGACTGACGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaaaattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcctactatgtatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagtaaACTGTTTCTTTAACCCaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacaaggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaAAAAACATAAAGGATTTAAGGCAACATGTTTCGATGCAGTTTTctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatattttagggtgaagcacagtatgctgttgtagttttcatataattgatgagtcaaacatgagatgtgttttaaattgcaagacGTGAATTAACAATATCTTCATCAAGATTCAAATCTTGCatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgtgaaggataagggtgttcataatgagaagtgcagtcactatcctgatctctgagtttgtagaactgacagatctgcttggaataaatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttaatgacactttacatatataaataaatatcactgaactttctaaatgaaacctaacgctcattctttgttcagtaatgatattgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaat
>TCONS_00013505
tctcactcccaactcgtcacatactgacgcttggtcagtaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattgataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataaatattttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttttttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCAGCTAAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTTCAGATCAGTGCTGA

Function

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013881 False 1663 lncRNA 0.33 1 41866169 41867831
TCONS_00013505 True 880 lncRNA 0.37 3 41867614 41869392

Neighbor

gene id symbol gene type direction distance location
XLOC_006868 CT583720.1 coding downstream 21102 41844953 ~ 41845067 (-)
XLOC_006867 CABZ01117863.1 coding downstream 203081 41662972 ~ 41663088 (-)
XLOC_006865 si:dkeyp-86d6.2 coding downstream 319390 41124594 ~ 41546779 (-)
XLOC_006866 BX548002.1 coding downstream 635760 41230293 ~ 41230409 (-)
XLOC_006864 NA coding downstream 752107 41011832 ~ 41114062 (-)
XLOC_006870 ipmka coding upstream 18183 41887575 ~ 41908583 (-)
XLOC_006871 cisd1 coding upstream 40950 41910342 ~ 41917050 (-)
XLOC_006872 nanp coding upstream 74746 41944138 ~ 41947996 (-)
XLOC_006873 NA coding upstream 119512 41988904 ~ 41992203 (-)
XLOC_006874 NA coding upstream 153401 42022793 ~ 42026479 (-)
XLOC_006471 BX537274.2 misc downstream 31601264 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 41039944 825904 ~ 826225 (-)
XLOC_006863 NA non-coding downstream 888759 40961735 ~ 40977410 (-)
XLOC_006875 NA non-coding upstream 161915 42031307 ~ 42045075 (-)
XLOC_006877 NA non-coding upstream 254470 42123862 ~ 42186670 (-)
XLOC_006883 BX936318.1 non-coding upstream 728368 42597760 ~ 42602408 (-)

Expression


Co-expression Network