CI01000002_00401987_00402742


Basic Information

Item Value
gene id CI01000002_00401987_00402742
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 400991 ~ 402777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000002_00401987_00402742.mRNA
ACATAAAGGGGCAGAAAGCTACTGTATTTCACTACTAGATGGCGATGTCTACTCTTTTTTTGTTGTGGAGATGAATAAGTTTGCTCAAATGAGAAAGAGGATTATTAGGTGTTAAATAAAAGATTTTATATTATTATTATTATTATTAGTTGTAGTAGCAGTAGTAGTATTGATTCCAATGACTGTTTTAAAATTTTATATTATTATAGATTGTACTATTATAGATTATACTATTTTATATGCCATATAGACTATGCAAGACATGGCAGTTTTCTTACTAGTTTCTAGTGTATGAGTCTTTGTATTGATACTAGCAAAATATCTCTACATCTATACATGTAGCATGTGTGTGACACTGTCACATAAAAGACATTTTACTGCTTTATTTATTACTATGATTTATGTATAATAGAGTTTTAATTGGTTTACATGTTTTTTAGTCCATTTTATTCCTCTTAACATTTTAAGTGCGTATGTTTTTTCAGAAATGAATGATTGGCCTGTCATGTGACCAGTCACATGACAGGAAGCAGGAAGTACATCTGTATAAAGAGAGCAGCATGGCAAACAAACAAGGATTCAGTAACAGTCAACAACTTACCTGGATTGTGGAGTTTCCTTTTTGCGGACTTACCTCTCCAGTCACAACCTTACAAACCTTTGGATTATCACTACCGTGGACATTTGTATATACACTGGTGGACACTCACTGTTTTAGGGTATGGTACTTTGGACTGTATGCTTTTAACAGACTGAGTTTTCCTGGTTTTATTGTGTTGTTTTAAAGTTCCCTGTGAATATTGTAAATACACAATTCTTATTTAAACTTATCACTGTTTTATGTCTCATTCTTTTAACCACTAACAAACTCACACAGTAAAATCTGACCCCATTTTAAATCTTGTGACTCAACCGATTTGGCTGATCGTTACATATGGTGGCCCGTACAGGGAACGTTTAAGATTTTAAAAAATTGTGTTGATAAAGTGGTAAAAGATGACGACTCATTTTGGTAATGCTGCTCCTTTTAAAACACCTGCTAATTTTAATGATGAACGGATTTTACACCAGTGTGATTGTGAACCGCTTCGTGCTGAAGTACTTTCTCTTAAAAACCTTGTTTTAAAACTGGAGAAGGATTTTAAAGACTCTGTTGAAAGTCATTTTAACCGTGAAGTGTATTTTAGAGAGGCTGTGGATGTAAAATTCAATAAGATGGAGGAATATGTGAAAGAGGCTATGGCAGCATTAGAAAAAGAGGTTGTTGAGTGCGTTCGGAGGAGAGACAAACAGTGGGCAAAACAACTTAAGGAAAAGAAACTTCCGGAAGCCACTGTCCCAACTCCTGCAGAGACATCCAACCCTGTGCCTTCCATCTACACCTCTTCACCTCCCACTGACTGTTCCACCATCTCAACACCTTCACAGACGGACAGCACAACAGAGCAAGGAATTAGCTGCACCAAGACATCATCAGGGCCAGATGTCAGCTACATCTTCTCTGTTCTTCCCTTCTCCAGTGAGGAAGTCAACAGCACACAACAGGATGACGTCACACTCACCATCATCTCTTCCACACCCCAGACAAACAGGATCACAGTGATCAACCACCAGGGCTTGCTGTACCGACGGATCCAGCGCAAGGACGGCCAGTACCGACTGCAGCTTGTCGTTCCAAAGGCCTTGATCAAACAAACGCTACAGAGCCTCCACGAAAGGACAATGGAGAGGCATTTTCCTCAGCACATCTAACAGACATTGGTTTTACTGTGTCAAAACCTTTGACG
>TU23697
CGTTCGGAGGAGAGACAAACAGTGGGCAAAACAACTTAAGGAAAAGAAACTTCCGGAAGCCACTGTCCCAACTCCTGCAGAGACATCCAACCCTGTGCCTTCCATCTACACCTCTTCACCTCCCACTGACTGTTCCACCATCTCAACACCTTCACAGACGGACAGCACAAGACATCATCAGGGCCAGATGTCAGCTACATCTTCTCTGTTCTTCCCTTCTCCAGTGAGGAAGTCAACAGCACACAACAGGATGACGTCACACTCACCATCATCTCTTCCACACCCCAG

Function

NR:

description
hypothetical protein cypCar_00015593

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000002_00401987_00402742.mRNA False 1787 mRNA 0.38 1 400991 402777
TU23697 True 288 lncRNA 0.40 2 402262 402574

Neighbor

gene id symbol gene type direction distance location
CI01000002_00066136_00130168 BMP7, BMP7.1, BMP7B, BMP7.1.L coding upstream 270823 66136 ~ 130168 (+)
CI01000002_00021260_00021739 NA coding upstream 379140 21260 ~ 21851 (+)
CI01000002_00407685_00411542 NA coding downstream 4700 407477 ~ 411922 (+)
CI01000002_00470438_00473433 NA coding downstream 67661 470438 ~ 474568 (+)
CI01000002_00699406_00707935 CSRP1, CSRP1A, CSRP1B coding downstream 296280 699057 ~ 708305 (+)
CI01000002_00718489_00718872 PHLDA3 coding downstream 315445 718222 ~ 719501 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding downstream 335350 738127 ~ 744755 (+)
G21045 NA non-coding upstream 20812 319605 ~ 380179 (+)
G21017 NA non-coding upstream 29490 298783 ~ 371501 (+)
G21056 NA non-coding upstream 58604 341335 ~ 342387 (+)
G21101 NA non-coding downstream 1731 404508 ~ 407349 (+)
G21117 NA non-coding downstream 36976 439753 ~ 440376 (+)
G21238 NA non-coding downstream 59291 462068 ~ 462324 (+)
G21240 NA non-coding downstream 61339 464116 ~ 464324 (+)
G21243 NA non-coding downstream 65455 468232 ~ 468435 (+)
G21239 NA other downstream 60778 463555 ~ 463916 (+)
G21254 NA other downstream 76370 479147 ~ 480455 (+)
G21272 NA other downstream 120230 523007 ~ 525797 (+)
G21930 NA other downstream 984837 1387614 ~ 1409057 (+)

Expression


Co-expression Network