CI01000002_00718489_00718872 (PHLDA3)


Basic Information

Item Value
gene id CI01000002_00718489_00718872
gene name PHLDA3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 718222 ~ 719501 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000002_00718489_00718872.mRNA
ATATAAAAGTCGGAAATTGATCTTTAGCCACAGAGCTGTCTGGCGGCAATGCAGCGAGGACGCGTTATCATCAAGAACGGGCTCTTTAGTGGAATTTCAGCAAAAACGTTTAAAGTTGAGAGAAAGGAATAAATGAAGGCGTTTTATACTGTATGGGCGCACAGCGGTTACGCGCGTTTGCGTGCAATGTTCGGTCGAAAACATCAGTGAACGCTTCGTCGATTCCCATTAACGTTTGTTTTTGTTTCACACCAACCTTCATTCAGAATGAACCAGTGTAAAGTCATGAAGGACGGTTATCTGGAGAAGAGGAGTAATGGACTTCTGCAGCTGTGGAAGAAGAAGCGTTGCGTTCTGTCAGAGGACGGACTCCGGCTGTACGACTGTAAAGGCGAGAGCAGCAAAGAGATGCGCTTCGAGCAGATGACCACGCTGGACTGTGTGGAGTATAAACGGGGTCTGGTGTACTTCACCATCGTGATGAACGGCGGGAAAGAGATTGACTTCAGGTGCCAGCAGGAGGGAACGGCGTGGAACGCGGAGATCGCGCTCGCGCTGGTGCGCTTCAAAAACCGCGTCGCCGTTCAGACCGGCAGGAACAGACATTTGTCACATCTGGGCAGCTGCGGGGAGGGAGACGTCGAGCTTTGAGGGTAAAGACAACTCATTTTGATGTTGATCAGCATTTATTCTGGAAGGGCTGGTTGTGTGTCCTATAGCATGGAGGAGCGTTCGCGTGTGTTCAGGAATCAATTATCCACAATAACATCTGCTTTTCATTTACTGGAGTGAGCTTTATGAAAGACCGCTCTGTCCGCTCTCACACGCGTTTGCGTTCACGTCTTTTGGAAAATCACTGTTAAATAGGCTATTCTTTCGCAGTTTTGAGGCTTTATCGAAGGTTTAGCATGAAATAGCTGAGGATCCGGGAGCATTCCCAATTTCCTGTTGGAATTTCGATGATAAATTGAAACCAAATCTAAAGTATCCCATTGGGGACATATCACATAGTAAAAGCTGTATCTTTTAGAACGCATAGTTCCCAATACAACCATAATCTCCAGTTGGAATGATGCTCCCGAGGGACATCAAAGAGAACTCCAGTAGCTCCCTAAGTCATTGTCCTGTTACTAAGTCAGTAATCAGTTCATCAAGTTTTCAAAAGCACACTATTCATAAATAGTTATAAAATCATTTTGGATTTATACATTATTCAATAGGATGTTTTAAAATTCTTATTTGATCCCATTATAATCCTTTACATTCGGTTCCGCATTTTA

Function

symbol description
phlda3 Predicted to enable phosphatidylinositol phosphate binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; negative regulation of protein kinase B signaling; and positive regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in plasma membrane. Is expressed in blastomere; dorsal aorta; fin bud; and head. Orthologous to human PHLDA3 (pleckstrin homology like domain family A member 3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000002_00718489_00718872.mRNA True 1280 mRNA 0.45 1 718222 719501

Neighbor

gene id symbol gene type direction distance location
CI01000002_00699406_00707935 CSRP1, CSRP1A, CSRP1B coding upstream 9917 699057 ~ 708305 (+)
CI01000002_00470438_00473433 NA coding upstream 243654 470438 ~ 474568 (+)
CI01000002_00407685_00411542 NA coding upstream 306300 407477 ~ 411922 (+)
CI01000002_00401987_00402742 NA coding upstream 315445 400991 ~ 402777 (+)
CI01000002_00066136_00130168 BMP7, BMP7.1, BMP7B, BMP7.1.L coding upstream 588054 66136 ~ 130168 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding downstream 18626 738127 ~ 744755 (+)
CI01000002_00772164_00786566 TNNT2, TNNT2A coding downstream 52663 772164 ~ 786566 (+)
CI01000002_01017365_01040978 NA coding downstream 297688 1017189 ~ 1041687 (+)
CI01000002_01047128_01076568 NA coding downstream 327467 1046968 ~ 1076571 (+)
CI01000002_01103311_01128430 LGR6 coding downstream 383810 1103311 ~ 1128805 (+)
G21372 NA non-coding upstream 40455 677554 ~ 677767 (+)
G21269 NA non-coding upstream 93903 595037 ~ 624319 (+)
G21258 NA non-coding upstream 201839 511442 ~ 516383 (+)
G21265 NA non-coding upstream 207325 506296 ~ 510897 (+)
G21251 NA non-coding upstream 241365 476647 ~ 476857 (+)
G21411 NA non-coding downstream 67784 787285 ~ 788362 (+)
G21415 NA non-coding downstream 75776 795277 ~ 799950 (+)
G21552 NA non-coding downstream 126945 846446 ~ 846658 (+)
G21554 NA non-coding downstream 130677 850178 ~ 863796 (+)
G21561 NA non-coding downstream 145196 864697 ~ 865115 (+)
G21272 NA other upstream 192425 523007 ~ 525797 (+)
G21254 NA other upstream 237767 479147 ~ 480455 (+)
G21239 NA other upstream 254306 463555 ~ 463916 (+)
G21930 NA other downstream 668113 1387614 ~ 1409057 (+)

Expression


Co-expression Network