Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000002_00772164_00786566 |
| gene name | TNNT2, TNNT2A |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000002 |
| NCBI id | null |
| chromosome length | 1907571 |
| location | 772164 ~ 786566 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| tnnt2a | Predicted to enable cytoskeletal protein binding activity and protein-macromolecule adaptor activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within several processes, including animal organ development; circulatory system development; and nitric oxide biosynthetic process. Part of troponin complex. Is expressed in cardiac muscle; cardiovascular system; and mesoderm. Used to study cardiomyopathy and hypertrophic cardiomyopathy. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type). |
| tnnt2 | Enables cytoskeletal protein binding activity and identical protein binding activity. Contributes to microfilament motor activity. Involved in several processes, including muscle filament sliding; regulation of ATPase activity; and ventricular cardiac muscle tissue morphogenesis. Located in cardiac myofibril and striated muscle thin filament. Part of cardiac Troponin complex. Implicated in intrinsic cardiomyopathy (multiple). Biomarker of COVID-19 and myocardial infarction. |
| description |
|---|
| Troponin T2, cardiac |
| id | name | namespace |
|---|---|---|
| GO:0005200 | structural constituent of cytoskeleton | molecular_function |
| id | description |
|---|---|
| K12045 | TNNT2; troponin T, cardiac muscle |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000002_00772164_00786566.mRNA | True | 935 | mRNA | 0.48 | 12 | 772164 | 786566 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000002_00738127_00744469 | TNNI1A, TNNI1B, TNNI1 | coding | upstream | 27409 | 738127 ~ 744755 (+) |
| CI01000002_00718489_00718872 | PHLDA3 | coding | upstream | 52663 | 718222 ~ 719501 (+) |
| CI01000002_00699406_00707935 | CSRP1, CSRP1A, CSRP1B | coding | upstream | 63859 | 699057 ~ 708305 (+) |
| CI01000002_00470438_00473433 | NA | coding | upstream | 297596 | 470438 ~ 474568 (+) |
| CI01000002_00407685_00411542 | NA | coding | upstream | 360242 | 407477 ~ 411922 (+) |
| CI01000002_01017365_01040978 | NA | coding | downstream | 230623 | 1017189 ~ 1041687 (+) |
| CI01000002_01047128_01076568 | NA | coding | downstream | 260402 | 1046968 ~ 1076571 (+) |
| CI01000002_01103311_01128430 | LGR6 | coding | downstream | 316745 | 1103311 ~ 1128805 (+) |
| CI01000002_01154239_01172018 | NA | coding | downstream | 366945 | 1153511 ~ 1172865 (+) |
| CI01000002_01257892_01258637 | NA | coding | downstream | 471151 | 1257717 ~ 1258637 (+) |
| G21372 | NA | non-coding | upstream | 94397 | 677554 ~ 677767 (+) |
| G21269 | NA | non-coding | upstream | 147845 | 595037 ~ 624319 (+) |
| G21258 | NA | non-coding | upstream | 255781 | 511442 ~ 516383 (+) |
| G21265 | NA | non-coding | upstream | 261267 | 506296 ~ 510897 (+) |
| G21251 | NA | non-coding | upstream | 295307 | 476647 ~ 476857 (+) |
| G21411 | NA | non-coding | downstream | 719 | 787285 ~ 788362 (+) |
| G21415 | NA | non-coding | downstream | 8711 | 795277 ~ 799950 (+) |
| G21552 | NA | non-coding | downstream | 59880 | 846446 ~ 846658 (+) |
| G21554 | NA | non-coding | downstream | 63612 | 850178 ~ 863796 (+) |
| G21561 | NA | non-coding | downstream | 78131 | 864697 ~ 865115 (+) |
| G21272 | NA | other | upstream | 246367 | 523007 ~ 525797 (+) |
| G21254 | NA | other | upstream | 291709 | 479147 ~ 480455 (+) |
| G21239 | NA | other | upstream | 308248 | 463555 ~ 463916 (+) |
| G21930 | NA | other | downstream | 601048 | 1387614 ~ 1409057 (+) |
