CI01000002_01047128_01076568


Basic Information

Item Value
gene id CI01000002_01047128_01076568
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1046968 ~ 1076571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000002_01047128_01076568.mRNA
ACATAAAGAGCAAACAAAAGATATTAGACATCCAGTTTTCTCATGTGATTTGGAGACTATATGGATCTTGAAGTAGCAGTGCGCAATTGCGTGCATGTTTTGCGATCACTCCCACAGGGTAGGATGTGCACACTAACATTGCAGAGATTCCTCCTGCGCCATGGAAATCTGCCGGACCCCTGTCCTGTCATCAACCCCCATTCTCTCCTGCCACAAAGGGGGCATTGTGTTCAGTCCCAGACCCGGGCAGACTGTCCTCAAACCAATCATGTTTGGCAAAGGCTCAGATCTTTGGCCAAGTGTGGTGAGTAAAGCCTGCTCAAAGCTCTCATCCAGCAGCAGCCAGATCCGCTGGCAGGCAGTAGCATCAAAGACGATAAGAGTCCCTGTGCTAATGCCACTCTATGGAAGGAAGGATTACAAGGCAGAGAAAAGGAGAGCGCAGGGACGAGACAACGGAGAGCGGGAAGAAAAGCGGGAGATCACAGCGACACTTAGAGCCAACAAAGGCGACGGAAGGAAAATGAGGGAGAAAAAACGATATCGAGATTGTTTGAAGGACATGGGCACTTTAAATAGAGTCCTCATGGAGAACACTGGCGGAGGCTTAGGTGTCACACACATTGTCTCCTTTCAGGGAGCCGCAATATGGCAACAGTGCAACTGGCAAGCGGTTCAGACAGAGTCCAGAAGTTCTTTCTTACCAAATTACAAATCACTAAGAATCACACATTTAATAGCAGATGAGATGCTTAAACTGTCATCTCAGATTCCAAAGACTTTGTTTTGTGGTCCAAACCACGTCATCTTTTGTCTATATGCAAAAGGAGGCAGACGGAACAGAACAATGTCTGTTCTGCCTGTGTCCGTGTGGGAGAAGTGCACAAAAACATCCTCTCGGGGCCTAATTCTTCTAAAGCTCCGCAAAGCCAAGGCAGCTTTTCGCGAACTTATTCAAGAGGAAATTGAACAAAGTGATGCCGAAAAGACCAAAAAGTTACTAATCTCAGATGGATCGTTTGTCTTGTGTTTTTTCGCTCAGGAAAGTGTTTGTGAGTTAGTGAGTGTCCATACAAGGGAGACAAAAAACAGGAAACGTGCCAACAATGCTCAGATTGTTCCAGTAGTGCTGATAAATGGGCCGCTGTCATCAAGGGGCTGCTGTAGGCTAGCAGTCAACACCTTGATGGCAAAGCTCATTAAGTCAGTTCATGTGTGCGATATTGGGAGCAGTTCAAAACTCAAATATTCCCTCCAGTTTAACAGGTTTGTGTTGACTGCATTCCATGCCACCATGTCAGTGGAAAACAGTGGTGGTCAGGCTCAGATGTTCAAGGTCTTTGCAGTAAAACCACTTCAGCTGATTCCCGATTCATCTGTTACACTTCTGGAGTGGCTCAACCCTTGGGATCTCAGTATGAACAACATCAGTGAGATTCAGCCCAACGCTTTCCACAACCTGCACTTCCTCAGTGAACTCTCCATGATGCTAGAGTACTTCCTGCAGCTTCATATAAAAGATCAAATGTATTATATACCAACATCTAGCATGTACATACCCTGTCTAGTCCTTTATGTGTCAGGCATCAATCACAATAAGTTGAAGGCTAAAGCCAATATAGCATGTCTGCTCACACTTTTCCCCCTGAAGGACCAATTAGCTCAGAAGGTTGAGGATATCAGGGTGCAGATTTTGCCTGGTTCATATGACCCTTCGACTGCTCGTTTCACTTCTGTGGCATTCAATCAGTTCACTCCTATTTCACTTCAGTCTTTAGCGGAGATAATTGGTCAGCTGAAACCTACAAATTGCTGTATTGATATTATTCCATCAACAATGATAAAACAGACTTTCGGTATTACTGGTCTGAGTTTACTGATGTAGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000002_01047128_01076568.mRNA True 1888 mRNA 0.45 13 1046968 1076571

Neighbor

gene id symbol gene type direction distance location
CI01000002_01017365_01040978 NA coding upstream 5281 1017189 ~ 1041687 (+)
CI01000002_00772164_00786566 TNNT2, TNNT2A coding upstream 260402 772164 ~ 786566 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding upstream 302213 738127 ~ 744755 (+)
CI01000002_00718489_00718872 PHLDA3 coding upstream 327467 718222 ~ 719501 (+)
CI01000002_00699406_00707935 CSRP1, CSRP1A, CSRP1B coding upstream 338663 699057 ~ 708305 (+)
CI01000002_01103311_01128430 LGR6 coding downstream 26740 1103311 ~ 1128805 (+)
CI01000002_01154239_01172018 NA coding downstream 76940 1153511 ~ 1172865 (+)
CI01000002_01257892_01258637 NA coding downstream 181146 1257717 ~ 1258637 (+)
CI01000002_01474926_01477596 NGFA coding downstream 398355 1474926 ~ 1477913 (+)
CI01000002_01546448_01547246 NA coding downstream 469877 1546448 ~ 1547474 (+)
G21612 NA non-coding upstream 46723 1000012 ~ 1000245 (+)
G21610 NA non-coding upstream 50726 996039 ~ 996242 (+)
G21607 NA non-coding upstream 55291 989439 ~ 991677 (+)
G21605 NA non-coding upstream 72805 960615 ~ 974163 (+)
G21603 NA non-coding upstream 87881 958803 ~ 959087 (+)
G21674 NA non-coding downstream 52897 1129468 ~ 1130441 (+)
G21697 NA non-coding downstream 56342 1132913 ~ 1144177 (+)
G21702 NA non-coding downstream 85889 1162460 ~ 1162881 (+)
G21713 NA non-coding downstream 123105 1199676 ~ 1199884 (+)
G21714 NA non-coding downstream 124246 1200817 ~ 1201074 (+)
G21272 NA other upstream 521171 523007 ~ 525797 (+)
G21254 NA other upstream 566513 479147 ~ 480455 (+)
G21239 NA other upstream 583052 463555 ~ 463916 (+)
G21930 NA other downstream 311043 1387614 ~ 1409057 (+)

Expression


Co-expression Network