CI01000002_01103311_01128430 (LGR6)


Basic Information

Item Value
gene id CI01000002_01103311_01128430
gene name LGR6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1103311 ~ 1128805 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000002_01103311_01128430.mRNA
AGACAAATACAATATTCCAGAGGTCAGTCTTTTTGAGGAAGACAAAACGTGACTATGTCACATTTAATATCAGAACGGTGAAAAAGAGGAACCTTTACAGGGCTGTTGGCGCATCTGGAACCCATGAGAAAACCGCCAGACACTGCACACTGGCTCCTGAGCGAGCGCCGAGAGATTCAACGAGCTGTGAAGAGCCCAATTTTCCATCAGTTCCTCTTCCCTTAGGTTTGCACAGCAAACAGAATGTAGTCAGAGAATACGGGGAGTTCTTCAAGCCAAATAGCATTGTACTTTGGGTTCAAGTTCCTCTACTATTGATGCTCATCGTGCATTACCCTGAACTGAAGGACTCGAGGGTTGAGGAGGCCAGAGGGGAGGAATATACATTTGCTTCTGTTCATTCAAATAAAAACAGGCGTCTGGATGCCAACCTAATTATGGAGGTGCCAGCGAAGACCCTCCTGGGTATGCGGTCCCTGCGGCACTTGTGGCTTGATGACAATGCCCTGACGGAGATCCCAGTAAGCGCCCTCAACGACCTCTCTTCGCTCCAGGCTATGACCCTTGCCCTAAACCGCATCACCCACATCCCAGACTATGCCTTCAGGAACCTCACCAACCTGGTTGTCCTGCATCTTCATAACAACATGATCCGGACCCTCGGACAGAACTGCTTTGAGGGACTGCACAGCCTCGAGACTCTGGAATTGAACTTCAATGACCTTCAAGAGTTCCCCGTGGCCATTCGCACACTGGCCAAGCTTCAGGAACTGGGTTTCCACAACAACAACATTAAGGCCATTCCCGAGAGAGCGTTTGTGGGGAACCCACTTCTGCAGACCATTCATTTCTACGAGAATCCAATTCAGTTTGTTGGCAGATCAGCATTTCAGTTCTTGCCAAAGCTACACACACTCTCTTTGAACGGGGCCACTGAGATCCGAGAGTTTCCAGATTTGAAAGGAACCACCAGCCTGCAAGTTCTTACATTGACCCGAGCTGGACTGACCGGCCTGCCATACGACCTCTGCCACCTGCTGCCTAAATTAAGAGTGCTGGAGCTGTCTCACAATGTCATAGAAGAGCTGCCGAGTTTCTACCACTGTGCCTCGCTTCAAGAGATGGATCTAAGCTGGAACAGGATCAACACCATCCACCCTGATGCCTTTTCCTCTCTTCAGTCTCTCATCAAACTAGATCTCACTGGGAATCGATTGAGCAGTCTCCCACTAGCTGGGCTAACAAGCCTTACTCATCTTAAACTGAAAGGCAACATGGCACTCTCGCGTTCCTTCAGAGAGGAGGACTTCCCCAACATAAGGGTAATTGAGATGCCATATGCCTATCAGTGCTGTGTATTTGGAGCCTGCAACAGCTACAAAGCAGCCAGTCAGTGGGAAGAACAGATGGGCAGTGAAGAGGAAGATCTCCAGAAGAAAGCGCTGTCCCTGTTCCCCATTCACACGGACAACAACTATGACCTTGACTTAGAGGAATTCCAGTTAGCTATTGAAGAGTCCAAACTACAAACCAGCATACAGTGTACCCCCATCCCAGGTCCATTTAAACCATGTGATAACCTGTTTGACAGTTGGGTGGTACGGCTTGGCATGTGGCTCATCTCTTTGGTCTCGCTGATGGGAAACAGCCTTCTCCTCTTGACTGTCTTTGCATCCCCCAGCTATCTCTCCCCTGTTAAGTTCATCATCGGCACCATCAGTGGCGCCAACCTGCTTACGGGCCTGTGTACCGGCACCTTGGCACTGGTTGACGCCCGGACATTTGGAGAGTTCGCCATGCATGGAGCTCAATGGGAAATGGGTGCAGGTTGCCAAACAACAGGCTTTCTTTCAGTACTAGCCTCGGAGGGCTCCATACTCTTCCTGACTTTGGCTGCAGTGCAGTGCAGTGTGTCCGTGTCGTGTGCTCGTGCCTACGGAAAGTCGCCCTCCCTGGGAAGTGTGCGAGCCGCCTCAGTGGCGTGCTTAGCACTTTCATTGGCAGTCAGCGCTTTGCCACTAATTGGGGTCGGGGAGTACGGGGCCACTCCACTCTGCACGCCATCTCCACTGCCGGATGGCGAACCTTCCACCCTGGGTTTTATGGTCGCTCTGATAATGATGAACTCCCTGTGTTTCCTGGTGATCACCGGGACTTACATCAAACTGTACTGGGACCTGATGAAGGGTGACTTCGACAGCATTTGGGATTGTGCCATGATCAAGCATGTGGCTTGGCTCATCTTCACCAACTGCCTGCTCTACTGCCCCGTAGCCTTCCTCACCTTCTCCTCCCTTCTGGGACTCTTTCCTGTGAGTGAGGAGGTTGTCAAATCAGTCGTCCTGGTACTTCTGCCTCTTCCTGCAAGCATCAACCCCCTGCTCTACCTCCTCTTCAATCCACACTTCCGCGAAGATGCACGTCTCCTTTTTAGCAGAGCTCACCACCATCATGACCGCAACCTGGATTCCTTCATCTCGGTTGACACGGAGAAAAGCTCATATGACTCCACTCAAGCCCTGGTGTCCATTGCCGCTGAAGCAGATGCAGTGTTCGAGAGTTCATCAGCACCAAACCCAGAGACAGTCACCCGGTTTTCCTGCCCACCCTCAGTGCCTCTCATCCCATGCCAGATGCAGATGAAACCCTCAACAGAGAGGGAGAGCACTGGAGAGAACCTGGTCAGGTCAACACCAGGACTCATCACCAAAGAGCAGGAGCATTTTAGAAGCAGTGGGCTGGAAACTCATAATGGCACCTTCTTTTCTGGAGTCTACCACTCCCCACTTCTCTCAGCTCATTCTTAAGTCTTCTCCTAAACTCTAAAGTTTTCAAGGACTCTATGAGTGTGAGAAGTTGCGAGCCCACATATGAACTGACCCCTAAAACCTTCAGAGCTGACGAACAATGAACTGTTTTAATGTGGGACTATATACAACTGTACTGTCCCAACTGCTACATGGCATATAAAAAAGAAAAAAGAAAAAAAAAAAAGAAAAGCCTACTCACATTTTGTGACACAATCTTGTGGGCCATTCGGTAATTTAAGAAACAATCTTAAATGTTCAAAAACAAATATGCATTTATTTTTTGTAACTTTTTAACTTGTTTTTGTAATTAGGCTTAAAGGAATGTTCCGGGGTCAGTATCATTACCATCCAGGGAATACTGAGGATTTTCAA

Function

symbol description
lgr6 Is expressed in several structures, including Kupffer's vesicle; lateral line system; notochord; pectoral fin bud; and pharyngeal arch.

GO: NA

KEGG:

id description
K08399 LGR6; leucine-rich repeat-containing G protein-coupled receptor 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000002_01103311_01128430.mRNA True 3182 mRNA 0.49 15 1103311 1128805

Neighbor

gene id symbol gene type direction distance location
CI01000002_01047128_01076568 NA coding upstream 26740 1046968 ~ 1076571 (+)
CI01000002_01017365_01040978 NA coding upstream 61624 1017189 ~ 1041687 (+)
CI01000002_00772164_00786566 TNNT2, TNNT2A coding upstream 316745 772164 ~ 786566 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding upstream 358556 738127 ~ 744755 (+)
CI01000002_00718489_00718872 PHLDA3 coding upstream 383810 718222 ~ 719501 (+)
CI01000002_01154239_01172018 NA coding downstream 24706 1153511 ~ 1172865 (+)
CI01000002_01257892_01258637 NA coding downstream 128912 1257717 ~ 1258637 (+)
CI01000002_01474926_01477596 NGFA coding downstream 346121 1474926 ~ 1477913 (+)
CI01000002_01546448_01547246 NA coding downstream 417643 1546448 ~ 1547474 (+)
CI01000002_01650177_01674596 UHRF1BP1 coding downstream 521372 1650177 ~ 1674657 (+)
G21612 NA non-coding upstream 103066 1000012 ~ 1000245 (+)
G21610 NA non-coding upstream 107069 996039 ~ 996242 (+)
G21607 NA non-coding upstream 111634 989439 ~ 991677 (+)
G21605 NA non-coding upstream 129148 960615 ~ 974163 (+)
G21603 NA non-coding upstream 144224 958803 ~ 959087 (+)
G21674 NA non-coding downstream 663 1129468 ~ 1130441 (+)
G21697 NA non-coding downstream 4108 1132913 ~ 1144177 (+)
G21702 NA non-coding downstream 33655 1162460 ~ 1162881 (+)
G21713 NA non-coding downstream 70871 1199676 ~ 1199884 (+)
G21714 NA non-coding downstream 72012 1200817 ~ 1201074 (+)
G21272 NA other upstream 577514 523007 ~ 525797 (+)
G21254 NA other upstream 622856 479147 ~ 480455 (+)
G21239 NA other upstream 639395 463555 ~ 463916 (+)
G21930 NA other downstream 258809 1387614 ~ 1409057 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013737 NA coding CM030125.1 CM030125.1 40884954 ~ 40888451 (-)