Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000002_01474926_01477596 |
| gene name | NGFA |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000002 |
| NCBI id | null |
| chromosome length | 1907571 |
| location | 1474926 ~ 1477913 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| ngfa | Predicted to enable growth factor activity and nerve growth factor receptor binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; nervous system development; and positive regulation of peptidyl-serine phosphorylation. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon; dendrite; and synaptic vesicle. Is expressed in otic vesicle. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; end stage renal disease; hereditary sensory and autonomic neuropathy type 5; interstitial cystitis; and neurogenic bladder. Orthologous to human NGF (nerve growth factor). |
| id | name | namespace |
|---|---|---|
| GO:0008083 | growth factor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000002_01474926_01477596.mRNA | True | 1137 | mRNA | 0.52 | 2 | 1474926 | 1477913 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000002_01257892_01258637 | NA | coding | upstream | 216289 | 1257717 ~ 1258637 (+) |
| CI01000002_01154239_01172018 | NA | coding | upstream | 302061 | 1153511 ~ 1172865 (+) |
| CI01000002_01103311_01128430 | LGR6 | coding | upstream | 346121 | 1103311 ~ 1128805 (+) |
| CI01000002_01047128_01076568 | NA | coding | upstream | 398355 | 1046968 ~ 1076571 (+) |
| CI01000002_01017365_01040978 | NA | coding | upstream | 433239 | 1017189 ~ 1041687 (+) |
| CI01000002_01546448_01547246 | NA | coding | downstream | 68535 | 1546448 ~ 1547474 (+) |
| CI01000002_01650177_01674596 | UHRF1BP1 | coding | downstream | 172264 | 1650177 ~ 1674657 (+) |
| CI01000002_01755342_01805760 | NA | coding | downstream | 276555 | 1754468 ~ 1805772 (+) |
| CI01000002_01821988_01829384 | ANKS1A | coding | downstream | 343843 | 1821756 ~ 1829430 (+) |
| G21946 | NA | non-coding | upstream | 41314 | 1433369 ~ 1433612 (+) |
| G21945 | NA | non-coding | upstream | 41592 | 1433125 ~ 1433334 (+) |
| G21943 | NA | non-coding | upstream | 45534 | 1428964 ~ 1429392 (+) |
| G21942 | NA | non-coding | upstream | 46650 | 1427935 ~ 1428276 (+) |
| G21927 | NA | non-coding | upstream | 88400 | 1386289 ~ 1386526 (+) |
| G22022 | NA | non-coding | downstream | 7149 | 1485062 ~ 1485316 (+) |
| G22048 | NA | non-coding | downstream | 44509 | 1522422 ~ 1522715 (+) |
| G22067 | NA | non-coding | downstream | 108830 | 1586743 ~ 1646258 (+) |
| G22100 | NA | non-coding | downstream | 214333 | 1692246 ~ 1692450 (+) |
| G22101 | NA | non-coding | downstream | 215009 | 1692922 ~ 1693394 (+) |
| G21930 | NA | other | upstream | 65869 | 1387614 ~ 1409057 (+) |
| G21272 | NA | other | upstream | 949129 | 523007 ~ 525797 (+) |
| G21254 | NA | other | upstream | 994471 | 479147 ~ 480455 (+) |
| G21239 | NA | other | upstream | 1011010 | 463555 ~ 463916 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
