CI01000002_01650177_01674596 (UHRF1BP1)



Basic Information


Item Value
gene id CI01000002_01650177_01674596
gene name UHRF1BP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1650177 ~ 1674657 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000002_01650177_01674596.mRNA
GTTCACTAAGAACCTCTCCCCAGATAAGATCAACCTGAGCACACTGAAGGGAGAGGGTCAGCTGTCCAACCTGGAGCTGGATGAGGAAGTGCTGCAGAACATGCTGGATCTGCCCACCTGGCTGGCCGTCACCCGTGTCTACTGCAACAAGGCTGCTATACGGATACAATGGACAAAGTTGAAGACCAGTCCCATATGTTTGTTCCTGGATAAAGTAGAAGTTGAAATGAGAACCTGTGAGGAACCGCGGCCCCCAAACGGCCCTTCTCCAATTGCCATTACTGCAGGCCAAAGTGAGTATGGCTTCGCTGAGAAGGTTGTGGAAGGAATGTCTGTGATCATCAACTCAATCACAATTAAAGTTCAGGCCCGAGCGTTTCATGCCTCCTTCGAGCTCTGGCAGCTCCAGGGCTGCAGCCTCAATCCCAAATGGCAGAAGACCGACCTTCGTCACACACGCATTACACATCCTAAGAGAGGAGAGGTCCTAACGTTCAAGGAGATCAACTGGCAGAGCTTGCGCATAGAGGCGGACGCGATTGAGAGTGACGAACAGGATCTGGGCAGCACACCGCTGCGCCTCATTACCAACCAAGGACGTATACGCATCGCTCTCAAACGCAGGGTGAAGGACTGTAATGTCTTGGCCTCTAAGCTGTTCTTTATACTGGATGATCTGCTGTGGGTGCTGACAGACTCTCAGCTCAAGGCCATTATCCACTACGCCAAGTCTTTAAGTGAGGCCATGGAGAAGTCCGCGCAGCAGAGGAAGAGCATGGCTGCTGAAACACTACAGACTGCTCCTCCCTCTCCTGGGATCCACTCTCTGTGGACTGAACCTCCTCCACCTGAAGCGGTCGGGACTCACAGCACACTGGCCCAGTATTTTGACCTCCATGATGTTAAAGAATCATCCTACCACACTTTCATCTCCCGTCTTGACCTGCATATCTGCAACGACAGCTGTTCAGATTCTGATGAAGCTCCGCCTCCAGGCACGCAGGGTGCAATGCAGCTGACCCTCCGGAAGCTGGGCTGTGATTACTACCCTTTCCATAGACCAGGTGATGGCTGTCGGCACTGGGAGCGTCACTGCGGAGCGATGGAGTCTCGTGCTCAGTGGGCGGCCAAACTGCTGCAAGAATTTCAGAGGAGGGTGGAGGATCTGGGCATCCCTGGACCTCACACAGAACCAAATGTGTCTGCTAAAGACTCTCCAGCCAAAAAAGTCAAGGCAGACGGGGAATCACTGTCCAATTTCAGTCCTGAACGGACTCAGACCTCACGGCGGACATCAGCAGCCGCCCCGTCCTCAGGAACCCCACTGAAGAGACTTCGCTCCAGCTGTATGGTGATCCGTGTGGACGATCTGGACATCCATCAGGTGTCCACCGGAGGCCGTCACAGCAAGAAAACGCAGTCTCTCCTCTCCTGCAACCGCAAATCCCTACATCTTCCAGAAAACACTCCTGCAATTCACCTTCAGTTCACTGAATACTACTTCCCTGATAACCCTGGACTTCCTGTTGTGTTAGTACCCTGCTCTAATCTTTATGCCCAGCTGAATGGTCTGCAGCTGTGTCTAGATGCTCCAAGCGTCTTGTGGATGACTCTGTTTTCACGGGGTCTACACAGGACACTAGATCAGGTCAAAGCCTTTTACCACCTCCAGGACAGCACCAAAGCAGACGAACACATCGATATCCGCCTGGATGCAACACAGCTGAAGCTGATCATTCCTCTGGAATCCTCCATTTTGGATCACCCAGATCGCCCTCAGTCACTAAGCATCAGTCTTCCTCAAATTGTCCTCAGCAACACGCGTCACTCTCCTCACGGCTCCCGTTCGGACCTCAATAGCATTTACAACAGCTTCTCCGCCTGTCCTTTCTTCCATCCCACAGCTTGCCAACCGTTCCCTCGCGATCAGAGCCTCCTACATCCCCTGCCATCAGCATTCCTTCAACACTTTCTAGAAAACGAGTTCCTATCATTAGAGCACAAACGTCCCTCTCGCTCTCAGGATGTCTGGTCTGTCAGTCTGTCCCGAGTGACTCTAGGCTTTGAGGGGGCTCGTCGAGGGCTCAGAGGGAAAGCCCTTCCCTTCGTGGAGCCCTTTGCCATGTCTTTGTGGATGTGCCGCCCTTCTGCCTTCAAAAAAGATTCTCGTTGTTCAAGCATAGATGCCGATTCAAAATCTCCCACCGGTTCTAGAAAACATCCCCTCTTTGACTCACCACAGGGTGTAAATGACGTCATATCTGACAAAGTCAACCAGAACGAGGGTCTAGTCAACTCTCCCTTGGCCTCCATCCATATTTTGGCCCAATCGATCACTCCTGTCAAAATGTGGCTCAACCACTACCAATTTGTAGCCCTTTTGCGGATGAAGGACTACCTTGCCCGGCTTGCTGGAGATTTGACCAAGGACTTCCAGGGTTTGGGACAATCCAAACATAAATCATCAGATCCTCCTTCAGTTTGTGTCTCAGTCCTGATGGAGGCGATTGAGCTTGCTCTACTGCTTCCTCCTGCAACGTGCGAGCCAGAAGAAGCCAATTCTCCAGTGGAAACAGACACTCCTAGCTTGACAGACTCTGATCTCTCGCCATCACACCATGCTGGTGAGCCTGGCCTGCTGGAGGACAGTGGGACAGGAGGGAATGAGAATCAAGAAGATGATGCTGAGCAGGAGGGTTCGGTAGAGGAGGCTTGCGAAGCCATTGAAGAGGGAATGGATGGACAAACGGGGCAGGATGGTGAAGCTCAGGCCGTTGTTCCTGTCATGTCTCCTCTGCCAGACAACCCTGCATTACTGTCCCGGCATAGCTCCACTTTCAGCTTGGAGGGGGAGCTATCCAGTGCCCTGAATGCCACCAAAGGGGTCACCAAAGATGCATTCACCGCCTCCATGGATCTCACCAAAGGGGCACTGTCCATCACGAAAGATGCCTTCAGCATCCTGAGCCGAGGTTCTGGCATGACTAAACTCTTCACTCCTCAAAACAAGGAGCAAAGTTTACGGCCAGAGGAGTCCAGTCCCTCCATCATGGGGAATTTACGGCTTCAGTCCATGAAACAGTCGCCTTCCCAGAGTTCCTGTGACAGTGCCATTTTAGAGGGTAGTCTGGCGGACGATGGCTTATCCATTGACAGTGACATCAGTGAAAACTTTGTCATTCTAATGGACTCTGAGTCTGGTGTAGAGTCTTTGCGTCCTAATGGTACAGGTGTCCACTCGGGCAGCTGTGTTAGTCCTGCTCCAGGAACAGAAGGCGGGTCATCGGCAGACCTCAGCAGCTCTCTGTCCCAGAGCACTGAAGACATTGCCCAAGATATGGTGTCTGTGTTAGTTCTGTGTCTGAGTCGAATGGGGTGCCTGACAGAGATGCGCGGTGAAGATATTGTCGTGGCGCTGGAAGCACAGGAGCTTGTGCCTAAACAACATGGCAACCATAAAGTCACAGACCTGCTGGCTGGACTGACACTGACACAGGCTGCTTCTTCCTCTTCAAGTGCTCCACTATCTCCGGGCCCCCACTCCCTCTCCAGTCCCCCGGCAGCGTCCCTCAGGTTGGAGATGGGGCCGCGTGCGAGCAGACACTCTCCTCTGTCCGAGAGCGTGGGGTTCATGGAGATGTGCTTGACAGGGTGCAGAGCAGAGCTCCTGGCTTCTACCTTAAACACACTGGGACCCTTCCTAGAGGATGAGCTCAGCGCAGACCCCCAGCCAATGAGACTGTGGTTACGGGACACTGCTATTACACTAAAGGATGATGGTCCTCGTGTCTACCCAACTGCTCCTCAACCAGTTCCTGTGCTCTTCTCTCTGGACGGCATTATGCTGGAGCGTTTGGATGATGGGATCCTCTGCTTGAGATCTGCACAGAGCCAATCAGGGATTGAGACAGAAGGGAACAGAGAGAGAGATGACCAATCCTCCGTTAGAGTTGAGGAGAAGAACAAGTCTCTGGAGTCCAAACTCATGGACGTCCAGTCAGCTCTTGAGAAAGCTCTGTCTGACCGAGAGCGCCTGCTACAGGAAGTCAGGAAACACAACCCCTCCTTCACCTTATGATGTACAAAGGGAAAGAACCAGACTTCAGTCCAAATGAGGCACAAGATAACATGTCTTGTAG

Function


symbol description
uhrf1bp1 Orthologous to human UHRF1BP1 (UHRF1 binding protein 1).

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000002_01650177_01674596.mRNA True 4139 mRNA 0.53 20 1650177 1674657
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Neighbor


gene id symbol gene type direction distance location
CI01000002_01546448_01547246 NA coding upstream 102703 1546448 ~ 1547474 (+)
CI01000002_01474926_01477596 NGFA coding upstream 172264 1474926 ~ 1477913 (+)
CI01000002_01257892_01258637 NA coding upstream 391540 1257717 ~ 1258637 (+)
CI01000002_01154239_01172018 NA coding upstream 477312 1153511 ~ 1172865 (+)
CI01000002_01103311_01128430 LGR6 coding upstream 521372 1103311 ~ 1128805 (+)
CI01000002_01755342_01805760 NA coding downstream 79811 1754468 ~ 1805772 (+)
CI01000002_01821988_01829384 ANKS1A coding downstream 147099 1821756 ~ 1829430 (+)
G22067 NA non-coding upstream 3919 1586743 ~ 1646258 (+)
G22048 NA non-coding upstream 127462 1522422 ~ 1522715 (+)
G22022 NA non-coding upstream 164861 1485062 ~ 1485316 (+)
G21946 NA non-coding upstream 216565 1433369 ~ 1433612 (+)
G21945 NA non-coding upstream 216843 1433125 ~ 1433334 (+)
G22100 NA non-coding downstream 17589 1692246 ~ 1692450 (+)
G22101 NA non-coding downstream 18265 1692922 ~ 1693394 (+)
G22081 NA non-coding downstream 172481 1847138 ~ 1849864 (+)
G22110 NA non-coding downstream 192987 1867644 ~ 1868138 (+)
G22112 NA non-coding downstream 203272 1877929 ~ 1879570 (+)
G21930 NA other upstream 241120 1387614 ~ 1409057 (+)
G21272 NA other upstream 1124380 523007 ~ 525797 (+)
G21254 NA other upstream 1169722 479147 ~ 480455 (+)
G21239 NA other upstream 1186261 463555 ~ 463916 (+)

Expression


CI01000002_01650177_01674596(UHRF1BP1) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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CI01000002_01650177_01674596(UHRF1BP1) Expression in each Bioproject

Bar chart with 44 bars.
CI01000002_01650177_01674596(UHRF1BP1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013776 uhrf1bp1,LOC102796170 coding CM030125.1 CM030125.1 42665282 ~ 42689203 (+)