G21117


Basic Information

Item Value
gene id G21117
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 439753 ~ 440376 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU23729
GTCTACTATAGACTACTATTATAATGGAAGTTAGTTGACATGTAGTTGCAAAGTTACTTTTAGTTAGTAGAATGTCTGAAGTGGACCATCAAAATAAAGTGTAATTAAAATATTATTACTGAATATATATTTTATATTATGATATCCACTCACCTTGTAGAGTTAAACTGTACCTATCACTTTTTTCAGACTCAGTATTTCTGTTTTTTGCCTTGCATTCATAATTTCCACCATCTGTCACAGTGATGCTGGAATGATAGTCAGTTTTGAAATTAGTGGTGTCCTTGTACCAGTCGTATTGTAACTCAGATGCTCCTCCAGGGACCTCACAGTGCAGAGTGACTGTCTCTGTGCTGTACAGCACCTTGTGAGTTGGATTGCCAGTTATCTTGGGCTTGGGAATCAGAATCGGAGGGTCTAGGGGATGAATAATCCTTAGGTTAAAGTGGCTAAATACTTTTTAATGCAGTGGTGTAACTTAAAAATAAAATTGTTAAATAAAATAGTCATTAAAAGTCCAGGTTGCACTTTATTTTACAGTATATGTACTTACAGTGTACTACTTACCTAAAAAAATACTGGGTAATATAAGGTAACTACAGGGGTTAAGGTTGGGTTAAGGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU23729 True 624 lncRNA 0.35 1 439753 440376

Neighbor

gene id symbol gene type direction distance location
CI01000002_00407685_00411542 NA coding upstream 27831 407477 ~ 411922 (+)
CI01000002_00401987_00402742 NA coding upstream 36976 400991 ~ 402777 (+)
CI01000002_00066136_00130168 BMP7, BMP7.1, BMP7B, BMP7.1.L coding upstream 309585 66136 ~ 130168 (+)
CI01000002_00021260_00021739 NA coding upstream 417902 21260 ~ 21851 (+)
CI01000002_00470438_00473433 NA coding downstream 30062 470438 ~ 474568 (+)
CI01000002_00699406_00707935 CSRP1, CSRP1A, CSRP1B coding downstream 258681 699057 ~ 708305 (+)
CI01000002_00718489_00718872 PHLDA3 coding downstream 277846 718222 ~ 719501 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding downstream 297751 738127 ~ 744755 (+)
CI01000002_00772164_00786566 TNNT2, TNNT2A coding downstream 331788 772164 ~ 786566 (+)
G21101 NA non-coding upstream 32404 404508 ~ 407349 (+)
G21045 NA non-coding upstream 59574 319605 ~ 380179 (+)
G21017 NA non-coding upstream 68252 298783 ~ 371501 (+)
G21056 NA non-coding upstream 97366 341335 ~ 342387 (+)
G21238 NA non-coding downstream 21692 462068 ~ 462324 (+)
G21240 NA non-coding downstream 23740 464116 ~ 464324 (+)
G21243 NA non-coding downstream 27856 468232 ~ 468435 (+)
G21251 NA non-coding downstream 36271 476647 ~ 476857 (+)
G21265 NA non-coding downstream 65920 506296 ~ 510897 (+)
G21239 NA other downstream 23179 463555 ~ 463916 (+)
G21254 NA other downstream 38771 479147 ~ 480455 (+)
G21272 NA other downstream 82631 523007 ~ 525797 (+)
G21930 NA other downstream 947238 1387614 ~ 1409057 (+)

Expression


Co-expression Network