G21411


Basic Information

Item Value
gene id G21411
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 787285 ~ 788362 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU24049
ACCTATTAAAATACGTACAAATTGCAGTGAGATCGGGTTGTTAAATGAGAATTACACTTCAGTTTCTACTACAAAGAATCTTTCCAGTGTGTTCACGTGTTTACTCGTGGACGTCTGACCTCGATGGACTGAGTAGAGGAAATGAACCAGAGAAGATTTACACATGAAAGAATGCAGAGCCTCAGAGCCACACATACTTATATGGCAGAAGAGCTTTTAATGTAAATAAACATATGCATGTTTGTAATATGTAAAACATACGTAAGCATACACTTTATGGCACTGTGCATGTTTGCAAGGTATTTTGCAGGTTTTGAATCTGATTGAGAAAATAGATGGATTTGAGTGTTTACATGCTTGATTTTTTAGGTCTAAGCCATCCATTTCAATCTATTCTAAATTTCATTTGGATCGAGCTCAATCAGATCGATTGAGATGTTTACATGAAAAACTTTTCAGTACAGTTGAGCCATCAATCCAATTAGAAACTGATTATTTGTGTGCATGTAAACAGCTAGAGTGACGTAAACAGATTGAACAAATTCGCCACCAATCCAACAAAATGTAAAATAGTTGAGTCTCATTATTATGCAACAACTACTCCTGCATGAAGATTAATAAACTTGGCAGAAGGCTGGCGATTGTTGACCACTGAACTGGTTCTGACATTATTTTTTTTTTTTTAACCCTGCTATATGTCCTGGAGGACTTTCTTATTCAAATCAAACTCTGAGTCATCCACTCTGCCTCAGGCATGGAACACAGACACACAAGTCTTTGTGAATGCATGTCAGAGTGACAGTCCTGTCAGCTGGCAGAGCTGCTTCTGAGACAGAAAATGACTGTTGGAGCCAGAACTAAACTTGAGGGCATGGAGGCTTTGGGTTGCCTTTTGTTGCACAGCAAAGTCAGCATTTACCTGTGCATGTCTAGCACTAATCTCTCATCAACATTAGTCAGCAGAGATCTCAGCAGCTCTATCTGTTCTAATACAAAGGACGAGCTTCAGCAAGAACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU24049 True 1018 lncRNA 0.39 2 787285 788362

Neighbor

gene id symbol gene type direction distance location
CI01000002_00772164_00786566 TNNT2, TNNT2A coding upstream 719 772164 ~ 786566 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding upstream 42530 738127 ~ 744755 (+)
CI01000002_00718489_00718872 PHLDA3 coding upstream 67784 718222 ~ 719501 (+)
CI01000002_00699406_00707935 CSRP1, CSRP1A, CSRP1B coding upstream 78980 699057 ~ 708305 (+)
CI01000002_00470438_00473433 NA coding upstream 312717 470438 ~ 474568 (+)
CI01000002_01017365_01040978 NA coding downstream 228827 1017189 ~ 1041687 (+)
CI01000002_01047128_01076568 NA coding downstream 258606 1046968 ~ 1076571 (+)
CI01000002_01103311_01128430 LGR6 coding downstream 314949 1103311 ~ 1128805 (+)
CI01000002_01154239_01172018 NA coding downstream 365149 1153511 ~ 1172865 (+)
CI01000002_01257892_01258637 NA coding downstream 469355 1257717 ~ 1258637 (+)
G21372 NA non-coding upstream 109518 677554 ~ 677767 (+)
G21269 NA non-coding upstream 162966 595037 ~ 624319 (+)
G21258 NA non-coding upstream 270902 511442 ~ 516383 (+)
G21265 NA non-coding upstream 276388 506296 ~ 510897 (+)
G21251 NA non-coding upstream 310428 476647 ~ 476857 (+)
G21415 NA non-coding downstream 6915 795277 ~ 799950 (+)
G21552 NA non-coding downstream 58084 846446 ~ 846658 (+)
G21554 NA non-coding downstream 61816 850178 ~ 863796 (+)
G21561 NA non-coding downstream 76335 864697 ~ 865115 (+)
G21578 NA non-coding downstream 125990 914352 ~ 914569 (+)
G21272 NA other upstream 261488 523007 ~ 525797 (+)
G21254 NA other upstream 306830 479147 ~ 480455 (+)
G21239 NA other upstream 323369 463555 ~ 463916 (+)
G21930 NA other downstream 599252 1387614 ~ 1409057 (+)

Expression


Co-expression Network