G21552


Basic Information

Item Value
gene id G21552
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 846446 ~ 846658 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU24206
ATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGCTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGG

Function

NR:

description
rab-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24206 True 213 lncRNA 0.58 1 846446 846658

Neighbor

gene id symbol gene type direction distance location
CI01000002_00772164_00786566 TNNT2, TNNT2A coding upstream 59880 772164 ~ 786566 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding upstream 101691 738127 ~ 744755 (+)
CI01000002_00718489_00718872 PHLDA3 coding upstream 126945 718222 ~ 719501 (+)
CI01000002_00699406_00707935 CSRP1, CSRP1A, CSRP1B coding upstream 138141 699057 ~ 708305 (+)
CI01000002_00470438_00473433 NA coding upstream 371878 470438 ~ 474568 (+)
CI01000002_01017365_01040978 NA coding downstream 170531 1017189 ~ 1041687 (+)
CI01000002_01047128_01076568 NA coding downstream 200310 1046968 ~ 1076571 (+)
CI01000002_01103311_01128430 LGR6 coding downstream 256653 1103311 ~ 1128805 (+)
CI01000002_01154239_01172018 NA coding downstream 306853 1153511 ~ 1172865 (+)
CI01000002_01257892_01258637 NA coding downstream 411059 1257717 ~ 1258637 (+)
G21415 NA non-coding upstream 46496 795277 ~ 799950 (+)
G21411 NA non-coding upstream 58084 787285 ~ 788362 (+)
G21372 NA non-coding upstream 168679 677554 ~ 677767 (+)
G21269 NA non-coding upstream 222127 595037 ~ 624319 (+)
G21258 NA non-coding upstream 330063 511442 ~ 516383 (+)
G21554 NA non-coding downstream 3520 850178 ~ 863796 (+)
G21561 NA non-coding downstream 18039 864697 ~ 865115 (+)
G21578 NA non-coding downstream 67694 914352 ~ 914569 (+)
G21589 NA non-coding downstream 90538 937196 ~ 937501 (+)
G21591 NA non-coding downstream 91993 938651 ~ 940616 (+)
G21272 NA other upstream 320649 523007 ~ 525797 (+)
G21254 NA other upstream 365991 479147 ~ 480455 (+)
G21239 NA other upstream 382530 463555 ~ 463916 (+)
G21930 NA other downstream 540956 1387614 ~ 1409057 (+)

Expression


Co-expression Network