G21697


Basic Information

Item Value
gene id G21697
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1132913 ~ 1144177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU24388
TCCTGGCAGGCAGGACAGATATCTTATCATATCACACAGTAATTTTACTTCACAGCAGTGGCAAAAATAGCTTGAAACGTGACAAGTTTCTCTCTTTTGTTCTCCATTCGGACATCTGTGAACCCAGAGGACTGCAGCGCTTCCATGTAGACCTCAGGACGCCAGTTCTCCCCGCTAAACATGTTCTTCGAGGCTACTTTTTTAACACTCTCTAGTCTGAGAGCTGTAACCATAATTCCACTGGTTTCATCACTCTGTGAATCGCTCTCGCTCCCGCTTTCAGATCCGGCCAGAAGTAATAACAGTTGCAGTGAAACACCTTGTCAACAGTGTTTTCCTCTATTGGCATGGCCACCAAATCACTGCAATACAACACAGCCTTTCCTCTGGAGATCTGATCCTTCATGCGCTCACTGGCCATCTGATGCATGTATTGTGAGTAGTCCACACCGATCAGTTTCCCTCTCGGGCCCGTGAGGAACTGCGAGGCCGCCTGCAGACCAAGGCCCGGCCCATGACCCAGCTCCAGCACCGTGTCGTTGGGTTGTATGTTGCTCAGTTTCACAGCATTCTCCTCCAAAATCTGATTGTGCCATTTAAAGAACTTGCTTACCAACCATCCAGTTAAAGAATACATGGGGTGACCCAGCTGTTTGCCCACCTTTTTAGACAGCATTTC
>TU24392
TCCTGGCAGGCAGGACAGATATCTTATCATATCACACAGTAATTTTACTTCACAGCAGTGGCAAAAATAGCTTGAAACGTGACAAGTTTCTCTCTTTTGTTCTCCATTCGGACATCTGTGAACCCAGAGGACTGCAGCGCTTCCATGTAGACCTCAGGACGCCAGTTCTCCCCGCTAAACATGTTCTTCGAGGCTACTTTTTTAACACTCTCTAGTCTGAGAGCTGTAACCATAATTCCACCTGTTTCATCACTCTGTGAATCGCTCTCGCTCCCGCTTTCAGATCCGGCCAGAAGTAATAACAGTTGCAGTGAAACACCTTGTCAACAGTGTTTTCCTCTATTGGCATGGCCACCAAATCACTGCAATACAACACAGCCTTTCCTCTGGAGATCTGATCCTTCATGCGCTCACTGGCCATCTGATGCATGTATTGTGAGTAGTCCACACCGATCAGTTTCCCTCTCGGGCCCGTGAGGAACTGCGAGGCCGCCTGCAGACCAAGGCCCGGCCCATGACCCAGCTCCAGCACCGTGTCGTTGGGTTGTATGTTGCTCAGTTTCACAGCATTCTCCTCCAAAATCTGATTGTGCCATTTAAAGAACTTGCTTACCAACCATCCAGTTAAAGAATACGTGGGGTGACCCAGCTGTTTGCCCACCTTTTTAGACAGCATTTCTATAGTAAATAAGGAACCATGTTATTCCACCGACTGCACAATCTGAGCGTCACAACCTGTCACTCACATGAGATCGACCAATAGCAAGCTACACACATCCAACCATCCAATCAATTTCCCATAGACAAAATCAAGCCACGCCCTACATTTTGTTGTTGTTGTTATTGTTGTTGTTTAAAAAGCCATTTCACTCTGCAATACGTCACAATGTGGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU24388 False 679 lncRNA 0.48 3 1132913 1144177
TU24392 True 895 lncRNA 0.33 3 1132913 1137686

Neighbor

gene id symbol gene type direction distance location
CI01000002_01103311_01128430 LGR6 coding upstream 4108 1103311 ~ 1128805 (+)
CI01000002_01047128_01076568 NA coding upstream 56342 1046968 ~ 1076571 (+)
CI01000002_01017365_01040978 NA coding upstream 91226 1017189 ~ 1041687 (+)
CI01000002_00772164_00786566 TNNT2, TNNT2A coding upstream 346347 772164 ~ 786566 (+)
CI01000002_00738127_00744469 TNNI1A, TNNI1B, TNNI1 coding upstream 388158 738127 ~ 744755 (+)
CI01000002_01154239_01172018 NA coding downstream 9334 1153511 ~ 1172865 (+)
CI01000002_01257892_01258637 NA coding downstream 113540 1257717 ~ 1258637 (+)
CI01000002_01474926_01477596 NGFA coding downstream 330749 1474926 ~ 1477913 (+)
CI01000002_01546448_01547246 NA coding downstream 402271 1546448 ~ 1547474 (+)
CI01000002_01650177_01674596 UHRF1BP1 coding downstream 506000 1650177 ~ 1674657 (+)
G21674 NA non-coding upstream 2472 1129468 ~ 1130441 (+)
G21612 NA non-coding upstream 132668 1000012 ~ 1000245 (+)
G21610 NA non-coding upstream 136671 996039 ~ 996242 (+)
G21607 NA non-coding upstream 141236 989439 ~ 991677 (+)
G21605 NA non-coding upstream 158750 960615 ~ 974163 (+)
G21702 NA non-coding downstream 18283 1162460 ~ 1162881 (+)
G21713 NA non-coding downstream 55499 1199676 ~ 1199884 (+)
G21714 NA non-coding downstream 56640 1200817 ~ 1201074 (+)
G21716 NA non-coding downstream 60366 1204543 ~ 1204919 (+)
G21727 NA non-coding downstream 89773 1233950 ~ 1234229 (+)
G21272 NA other upstream 607116 523007 ~ 525797 (+)
G21254 NA other upstream 652458 479147 ~ 480455 (+)
G21239 NA other upstream 668997 463555 ~ 463916 (+)
G21930 NA other downstream 243437 1387614 ~ 1409057 (+)

Expression


Co-expression Network