G21911


Basic Information

Item Value
gene id G21911
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1371755 ~ 1372552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU24662
TTCAGCCCCTGACCAGAGTTCAGTGCCAGCTCTCGTCCCAGAACTTAATCAATTGCCAGTTATCGTCCCAGAGATCCGCACAGAGAACCCTCTCCTACTGATTGCTCTCCCTGTTATGGCGGTGGCCATAATATGTGTTTGGGCAGCACACTGCTTTCCAAATCCGTTAAAGGATTATTAGGCTGCATAAATTAGGTCAGCCGGAACCGGGAACACTTCCTATAACACCTGATGTACTCGTTACATCAGAAGAAGAATGGCATCTACGCTAATATTAGTCTTTCTGTTTATCCCGAGGTTCACCGTAGTCAACCGGATCCGGGCCGTATCCAGGTGAGACCAAGGACCTGCACCTTGACACGACCACAACGCAGCCCTGAAGTATCAGCAGAGATTGAGTCAACTAGATCATCCCCTGTGAAGGCCTCATCGACACGACAGCCACGACACAGTTCCTCAACAACCGTCCATACCGGCGTGATGAATACGATCCTCAATTGGATGGAACTGAAATAAATACTTTTAATGTTGCGATCCTATTGGACTTATGATAGCAACCTGAATTGTAACAAAGCACTGTTGGCCAGAGGAGAACTGGCACCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTTTTCTCCATTTTAACACCAATTTGCCACTTGTCTGCCACCTGATGTCACCTGATGGAGTTTGGGTTCCTTGCCGCTGTCGCCTCTGGCTTGCTTAGTTGGGGACACTTGACTTGACATTTGATATTCAACAGTGCTTTTGATCTGCCTGCATTGACACTATTC
>TU24672
TTCAGCCCCTGACCAGAGTTCAGTGCCAGCTCTCGTCCCAGAACTTAATCAATTGCCAGTTATCGTCCCAGAGATCCGCACAGAGAACCCTCTCCTACTGATTGCTCTCCCTGTTATGGCGGTGGCCATAATATGTGTTTGGGCAGCACACTGCTTTCCAAATCCGTTAAAGGATTATTAGGCTGCATAAATTAGGTCAGCCGGAACCGGGAACACTTCCTATAACACCTGATGTACTCGTTACATCAGAAGAAGAATGGCATCTACGCTAATATTAGTCTTTCTGTTTATCCCGAGGTTCACCGTAGTCAACCGGATCCGGGCCGTATCCAGGTGAGACCAAGGACCTGCACCTTGACACGACCACAACGCAGCCCTGAAGTATCAGCAGAGATTGAGTCAACTAGATCATCCCCTGTGAAGGCCTCATCGACACGACAGCCACGACACAGTTCCTCAACAACCGTCCATACCGGCGTGATGAATACGATCCTCAATTGGATGGAACTGAAATAAATACTTTTAATGTTGCGATCCTATTGGACTTATGATAGCAACCTGAATTGTAACAAAGCACTGTTGGCCAGAGGAGAACTGGCACCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTTTTCTCCATTTTAACACCAATTTGCCACTTGTCTGCCACCTGATGTCACCTGA
>TU24666
TAGTCAACCGGATCCGGGCCGTATCCAGGTGAGACCAAGGACCTGCACCTTGACACGACCACAACGCAGCCCTGAAGTATCAGCAGAGATTGAGTCAACTAGATCATCCCCTGTGAAGGCCTCATCGACACGACAGCCACGACACAGTTCCTCAACAACCGTCCATACCGGCGTGATGAATACGATCCTCAATTGGATGGAACTGAAATAAATACTTTTAATGTTGCGATCCTATTGGACTTATGATAGCAACCTGAATTGTAACAAAGCACTGTTGGCCAGAGGAGAACTGGCACCCCGACTAAGCCTGGTTTCTCCCAAGGTTTTTTTTTTCTCCATTTTAACACCAATTTGCCACTTGTCTGCCACCTGATGTCACCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU24662 False 798 lncRNA 0.48 1 1371755 1372552
TU24672 False 688 lncRNA 0.28 1 1371755 1372442
TU24666 True 383 lncRNA 0.34 1 1372060 1372442

Neighbor

gene id symbol gene type direction distance location
CI01000002_01257892_01258637 NA coding upstream 113118 1257717 ~ 1258637 (+)
CI01000002_01154239_01172018 NA coding upstream 198890 1153511 ~ 1172865 (+)
CI01000002_01103311_01128430 LGR6 coding upstream 242950 1103311 ~ 1128805 (+)
CI01000002_01047128_01076568 NA coding upstream 295184 1046968 ~ 1076571 (+)
CI01000002_01017365_01040978 NA coding upstream 330068 1017189 ~ 1041687 (+)
CI01000002_01474926_01477596 NGFA coding downstream 102374 1474926 ~ 1477913 (+)
CI01000002_01546448_01547246 NA coding downstream 173896 1546448 ~ 1547474 (+)
CI01000002_01650177_01674596 UHRF1BP1 coding downstream 277625 1650177 ~ 1674657 (+)
CI01000002_01755342_01805760 NA coding downstream 381916 1754468 ~ 1805772 (+)
CI01000002_01821988_01829384 ANKS1A coding downstream 449204 1821756 ~ 1829430 (+)
G21749 NA non-coding upstream 98584 1272873 ~ 1273171 (+)
G21741 NA non-coding upstream 121153 1250157 ~ 1250602 (+)
G21740 NA non-coding upstream 121789 1249572 ~ 1249966 (+)
G21739 NA non-coding upstream 122255 1249232 ~ 1249500 (+)
G21738 NA non-coding upstream 123023 1248498 ~ 1248732 (+)
G21919 NA non-coding downstream 6796 1379348 ~ 1379757 (+)
G21921 NA non-coding downstream 8128 1380680 ~ 1380950 (+)
G21922 NA non-coding downstream 8577 1381129 ~ 1381338 (+)
G21927 NA non-coding downstream 13737 1386289 ~ 1386526 (+)
G21942 NA non-coding downstream 55383 1427935 ~ 1428276 (+)
G21272 NA other upstream 845958 523007 ~ 525797 (+)
G21254 NA other upstream 891300 479147 ~ 480455 (+)
G21239 NA other upstream 907839 463555 ~ 463916 (+)
G21930 NA other downstream 15062 1387614 ~ 1409057 (+)

Expression


Co-expression Network