LOC122332175 (ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745)


Basic Information

Item Value
gene id LOC122332175
gene name ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 789452 ~ 811855 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU256247
ATATGAGTATTGTATTAGTCTGTTTGCCAAATGCACCCCAGGTGTCAGAAGAGGCGATAAAGAGAGATGCTGAGTTGGACAAGTACCTCGAGTCACGAGTGGAAGAGCTCATTGAGAAAGCAGGGGAAGAAGGGGTGCCTGAGCTGGCCCATGTCATGAGCAGCCTGTCCCAAGAAAGCATCCCCAATCTCCCACCAGGGGGTGGCCTTGCCAGCAAGCACAGTGTTATTGAAGCAGTGTACAACCGGTTAAACCCCCAAAGAGAAGAAGATGGTAGTGGTGCTGACCTCGAGGACCCGTGGTAGTCATCCTGCCCCTGAGGAAAGAGCACCTTTTCTACACAAGACATCAGTCATGTTTCTTTTGTTCCAGTGAAACCAAGAGATTCAACGGACAGTCCTTCAAGAGTCACAACACAATGGAAACAGTACAACCAAAAGCattacaaacactttttttctaatatatgAGGGAAAGAATGGAGATccagttttaaaaacaaactcaaacatgaaaaataactaaatacacatcatacaataaaaaaaacaaacagactttttctcacttttttgtGGTGGCTGTGGGTGTTCATTTTGAAACCGAGGATGTTTTGCGGGATGGACCCATGTACGTGCTGTGGTGCCTTTAAGTCGAAAAAGAGGTTTGCTAATGCCAGATGCCCTCAGCCCAGGATACAGTTGATAAACTCGGCTATGTGAGACCACTGCAGCCCCTGGTATGGGGTTATGGATCATCACTGGGTTTATTTGAGGATATATTTGACTGATGAATGCGTGTGGATCATGTTTTAAAGAGTTGCTTCATTACTACATAACCTGCGTGGAAAGGATTGAAGCTTGTTGGCTTTTTGCACCTTCCCTCCCTCCTCACGTGCGCTGACTGACCTTTAGGTAGAACCTCGGACTCGACTCGGCTTCGTTTCGCAGGTTATCACTTGAGTGGTTGTCAAAAGCTTTTTAATCCTGCTGTTTCAGAGAATTTAGAATATAtagagataaatatatatataaattcatatatattttaatttttttcccaagtTTGACGTTCTTTGTGGCTTAACGTGTGAAGCAATAGAGTTGTGTTGGTGGCGCCCGATGAGCGTGCCACGTTGTGTGAATACTTTAGACACACTGGGATTGTTGATGTACTTGTGTGACCCAGCCACCCGAGGACTGTGGGTGAATTTTGGCTAAAAGGGATTGTAAGTACCCACCAAAGCCACGCAGCTTTTCTCAGCTTCCCTTTGTATTATATCTCTCGGTCTTCTCTCACTTTCACAATGCAGATGTGAACTTGCAGCAACCtgcctttcttcttcttcttttttttcttttttccttcagaGTATATTGTAAagtggtgttttgttttggttgccGATCACGAAAAATACTAGCTTTGTGATGAACTCACAAGTTATTTTCTGATTCATCATGCAAGTGTAATGTTGGTTTTGCTCAGATATATTTTCAGCGGTCCATGGACTTAAGTACTCAGAGCCTGAAAGGTGATATTGAGCagaacaataaagaaataaaggaaaaaGCA
>XM_043229480.1
CAATGGTTACATCATTGCAGTGCCATAGATCTCAGGAGTGTGTTGAACTGCTCTCTTCACTTCATTGGAATGTGGAAATCTTGTATGAGCAACCTGTCGTCTGGATGTGTAACTCTTGAATGCAGGCCAACGTTAGGTCAGAACGTGGCCTGAGGAATGGGGGCGTTTTTAGATAAGCCCAAAACAGAGAAATACAATGCGCACGGGGAAGGGAACGGCCTGCGCTTTGGCCTCAGCAGCATGCAGGGCTGGAGGGTAGAGATGGAGGATGCGCACACAGCAGCCGTAGGCCTGCCACATGGCTTGGATGACTGGTCCTTCTTCGGCGTGTACGATGGGCATGCTGGCTCGCGTGTTGCAAACTACTGCTCCAAACATCTGTTGGAACATATCGTAGCTGCGGGGTCGGCAGATGAACTGCGGAAGGCTGGATCTCCGACACCCGAGACGCCAGCCATAGAAGCGGTGAAGAGGGGTATCCGCGCCGGCTTCCTGAGGATCGACGAACACATGCGCAGCTTCACAGACCTGCGGAACGGCATGGACCGCAGCGGCTCCACCGCGGTGGCTGTGCTGCTCTCTCCAGAACATCTGTACTTCATTAACTGCGGGGACTCTCGGGCCCTTCTCTGCCGCAATGCTCAAGTCTGCTTCTCCACGCTGGACCATAAGCCCTGCGACCCACGGGAGAAGGAGCGCATACAGAACGCGGGTGGCTCTGTGATGATCCAGAGGGTTAACGGATCGCTGGCTGTATCCCGAGCACTGGGTGACTATGACTACAAGTGTGTTGAGGGCAAGGGCCCCACAGAGCAGCTTGTGTCACCGGAGCCTGAAGTGTTCGAAATCGCTCGGTCAGATGCAGAGGATGAATTCGTGGTGCTGGCGTGTGACGGTATTTGGGATGTGATGAGCAACGAGGAGCTGTGTGCCTTCGTGCGATCGAGGCTGGAGGTGACGGATGACCTTGAGAGAGTGTGCAATGAGGTTGTGGATACTTGTCTACATAAGGTACAGCTCCTTACTCTTAAAGTTCTCCTATTATGCCATTTCTAATAttgcctttcatgc
>XM_043229481.1
CCGCCCATCACACGCAACCCCAGCTCGCGGCCGTCAATGGCACGTCACCTGTTTCTAACATGCAGCTAGAAACGCAAACACGGCTCGAAATTCAACTCAGATGACCACCGGTCAGGTCGTACTTATTTTTTTCGTTGAGCCGAAGTGAAACAGCATGTCAAAGATGTTCGTAACAGCTCGTAATCCCAGACGAGAGCCGTTGAGGGCAGACCTGACCGTGTGAATTTAACCGCATTAGCTAGCCAGCTAGCAGGGTTTACCTTTAGCTGAGCTAGTCGAAACGCACTAATATCAATAACGGGccaaatatttagatgtttagaGAGCGGGTTCTCGTCAAAAAGGCACATTTGACGGCCGCCTGGAACGTGGCGTCTACTGGAAGGGTGATTTGGACATAATAAAAAACGTGGCCTGAGGAATGGGGGCGTTTTTAGATAAGCCCAAAACAGAGAAATACAATGCGCACGGGGAAGGGAACGGCCTGCGCTTTGGCCTCAGCAGCATGCAGGGCTGGAGGGTAGAGATGGAGGATGCGCACACAGCAGCCGTAGGCCTGCCACATGGCTTGGATGACTGGTCCTTCTTCGGCGTGTACGATGGGCATGCTGGCTCGCGTGTTGCAAACTACTGCTCCAAACATCTGTTGGAACATATCGTAGCTGCGGGGTCGGCAGATGAACTGCGGAAGGCTGGATCTCCGACACCCGAGACGCCAGCCATAGAAGCGGTGAAGAGGGGTATCCGCGCCGGCTTCCTGAGGATCGACGAACACATGCGCAGCTTCACAGACCTGCGGAACGGCATGGACCGCAGCGGCTCCACCGCGGTGGCTGTGCTGCTCTCTCCAGAACATCTGTACTTCATTAACTGCGGGGACTCTCGGGCCCTTCTCTGCCGCAATGCTCAAGTCTGCTTCTCCACGCTGGACCATAAGCCCTGCGACCCACGGGAGAAGGAGCGCATACAGAACGCGGGTGGCTCTGTGATGATCCAGAGGGTTAACGGATCGCTGGCTGTATCCCGAGCACTGGGTGACTATGACTACAAGTGTGTTGAGGGCAAGGGCCCCACAGAGCAGCTTGTGTCACCGGAGCCTGAAGTGTTCGAAATCGCTCGGTCAGATGCAGAGGATGAATTCGTGGTGCTGGCGTGTGACGGTATTTGGGATGTGATGAGCAACGAGGAGCTGTGTGCCTTCGTGCGATCGAGGCTGGAGGTGACGGATGACCTTGAGAGAGTGTGCAATGAGGTTGTGGATACTTGTCTACATAAaggAAGTCGAGATAATATGAGTATTGTATTAGTCTGTTTGCCAAATGCACCCCAGGTGTCAGAAGAGGCGATAAAGAGAGATGCTGAGTTGGACAAGTACCTCGAGTCACGAGTGGAAGAGCTCATTGAGAAAGCAGGGGAAGAAGGGGTGCCTGAGCTGGCCCATGTCATGAGCAGCCTGTCCCAAGAAAGCATCCCCAATCTCCCACCAGGGGGTGGCCTTGCCAGCAAGCACAGTGTTATTGAAGCAGTGTACAACCGGTTAAACCCCCAAAGAGAAGAAGATGGTAGTGGTGCTGACCTCGAGGACCCGTGGTAGTCATCCTGCCCCTGAGGAAAGAGCACCTTTTCTACACAAGACATCAGTCATGTTTCTTTTGTTCCAGTGAAACCAAGAGATTCAACGGACAGTCCTTCAAGAGTCACAACACAATGGAAACAGTACAACCAAAAGCattacaaacactttttttctaatatatgAGGGAAAGAATGGAGATccagttttaaaaacaaactcaaacatgaaaaataactaaatacacatcatacaataaaaaaaacaaacaga

Function

symbol description
ppm1ba Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B).

NR:

description
PREDICTED: protein phosphatase 1B-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

RNA

RNA id representative length rna type GC content exon number start site end site
TU256247 False 1575 TUCP 0.42 4 805557 811855
XM_043229480.1 False 1071 mRNA 0.55 2 798518 804754
XM_043229481.1 True 1846 mRNA 0.52 6 789452 810837

Neighbor

gene id symbol gene type direction distance location
LOC122332167 LOC107666555,LOC107556920,LOC107747569,LOC107733787,LOC107585221,LOC107695029 coding upstream 70718 696869 ~ 718734 (+)
LOC122332170 eif4e,LOC107585229,LOC107747571,LOC107556921 coding upstream 91392 690615 ~ 698060 (+)
LOC122332186 metap1,LOC107556924,LOC107747566,LOC107695030,LOC107733733,LOC107666440 coding upstream 122195 658117 ~ 667257 (+)
LOC122332204 adh8b,LOC107747567,LOC107666442,LOC107747568,LOC107733735,LOC107695031,LOC107585225,LOC107666441 coding upstream 214586 566459 ~ 574866 (+)
LOC122332199 LOC107747572,LOC107666443,LOC107556922 coding upstream 240815 547154 ~ 548637 (+)
LOC122332161 LOC107747531,LOC107698747,LOC107666489,LOC107733775 coding downstream 81936 893791 ~ 902091 (+)
G172794 NA non-coding upstream 63545 725227 ~ 725907 (+)
G172784 adh8a,LOC107666441,LOC107747568,LOC107695031,LOC107733735,LOC107585225,LOC108263479 non-coding upstream 102246 553764 ~ 687206 (+)
G172800 NA non-coding upstream 116542 669363 ~ 672910 (+)
G172804 zgc:100846,cunh9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028,LOC107585223 non-coding upstream 276125 512574 ~ 513327 (+)
G172777 NA non-coding upstream 336152 441054 ~ 453300 (+)
G172737 NA other upstream 307420 465438 ~ 482032 (+)
G172778 mark3a,LOC107721219 other upstream 333372 446541 ~ 456080 (+)

Expression


Co-expression Network