LOC122332165 (nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425)


Basic Information

Item Value
gene id LOC122332165
gene name nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 476421 ~ 478867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229466.1
TCTTCCGAACCGGTTTTCTGGGTGGGGCAGACCGTAATAAAAACACGTGTCTGCTGTGTGTGGACTGCGAAGAAAACAGTCTGAAATGGCGGCTGACTGGAAACAGAAGTGTGCCTCGCAGTGGCAGCTGGGGGCTCTCGGTGTCCCTACGCCCGACGGCGTGGACTGGAAATCGGTGTTTGAGAAGAAGCCGTTTGAACGCAACCTACTGAAGAACCCCTCGCCTTACGGTGTAAGCCACAGCATCCCACCCCCCGAAACCCCTCGATCGGGAATGCCTCCTCCTTCAAGCCAGCCCCCTCAGTTTGAGCCCAACGGTAATTTCACTGGCTGGAAAACTAGTACAGAAGTTTTACCATATGATACTAGTGGAATTCCCCCAGGGGCTGTGGTCTGCTATCTGCCTCAGTTCAGGTGGTTCTCCTTGGAGCAGTGTGTGGACCTGAAGGCTGAGGGTCTATGGGACCAACTGCTGGATGACTTTCAGCCTGAGATCGTCATTGAGGACTGGTATGAGGAAAGTCAGCTTCATAAATCTATCTATCAGCTTGATGTGAAGCTCTTGGGTGCTGATGGTAAGACCGTTATCAAGCAGCACACATATAACCCTGAAGAGAACCTGGAGGTCTACTCGCACACCTGGAAGAAGGTCTCGCATGTATTCTCCAAGTATGGGTCAGGAGTGCGGTACATTCACTTCCTCCACAAACTGAAGAACCAGTTCATGGTTGAATTCTTTAATACCAAAGTCACAGACAGCTCGATTATTATCAAGACCAGCAAAGCCAGTGTAAAATAatcacagtcaaaaaaaaaaaactggtagGAGTTGATACACACTGTAGAgtttgtattttgaataaagCAATTGTCTTGTCTGCAAGGTTTTTATAAATTAACTGCACTTTCATAACATGTATCTAGCAagttaatactgtaataaaacattcctcattca

Function

symbol description
nccrp1 Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Is expressed in blood; cloaca; and head kidney. Orthologous to human NCCRP1 (NCCRP1, F-box associated domain containing).

NR:

description
PREDICTED: F-box only protein 50-like

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229466.1 True 958 mRNA 0.47 6 476421 478867

Neighbor

gene id symbol gene type direction distance location
LOC122332182 melk,LOC107702285,LOC107709443,LOC107750464 coding upstream 11358 433795 ~ 465063 (+)
LOC122332221 mark3a,LOC107721219,LOC107698147,LOC107582486 coding upstream 20291 446410 ~ 456130 (+)
LOC122332218 LOC107589543,LOC107708428,LOC107678525,LOC107721219,LOC107698147 coding upstream 31969 441763 ~ 444452 (+)
LOC122332211 kcng3,LOC107756869,LOC107590001,LOC107758134,LOC107586474,LOC108273984 coding upstream 186190 284894 ~ 290231 (+)
LOC122332217 haao,LOC107586504,LOC107699283,LOC107727361,LOC107590002,LOC107707146,LOC107678607 coding upstream 232128 239348 ~ 244293 (+)
LOC122332199 LOC107747572,LOC107666443,LOC107556922 coding downstream 68287 547154 ~ 548637 (+)
LOC122332204 adh8b,LOC107747567,LOC107666442,LOC107747568,LOC107733735,LOC107695031,LOC107585225,LOC107666441 coding downstream 87592 566459 ~ 574866 (+)
LOC122332186 metap1,LOC107556924,LOC107747566,LOC107695030,LOC107733733,LOC107666440 coding downstream 179250 658117 ~ 667257 (+)
LOC122332170 eif4e,LOC107585229,LOC107747571,LOC107556921 coding downstream 211748 690615 ~ 698060 (+)
LOC122332167 LOC107666555,LOC107556920,LOC107747569,LOC107733787,LOC107585221,LOC107695029 coding downstream 218002 696869 ~ 718734 (+)
G172777 NA non-coding upstream 23121 441054 ~ 453300 (+)
G172755 NA non-coding upstream 124883 293647 ~ 351538 (+)
G172733 NA non-coding upstream 416983 59199 ~ 59438 (+)
G172723 NA non-coding upstream 441090 34860 ~ 35331 (+)
G172804 zgc:100846,cunh9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028,LOC107585223 non-coding downstream 33707 512574 ~ 513327 (+)
G172784 adh8a,LOC107666441,LOC107747568,LOC107695031,LOC107733735,LOC107585225,LOC108263479 non-coding downstream 74897 553764 ~ 687206 (+)
G172800 NA non-coding downstream 190496 669363 ~ 672910 (+)
G172794 NA non-coding downstream 246360 725227 ~ 725907 (+)
G172778 mark3a,LOC107721219 other upstream 20341 446541 ~ 456080 (+)
LOC122332175 ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745 other downstream 310585 789452 ~ 811855 (+)

Expression


Co-expression Network