LOC122332170 (eif4e,LOC107585229,LOC107747571,LOC107556921)


Basic Information

Item Value
gene id LOC122332170
gene name eif4e,LOC107585229,LOC107747571,LOC107556921
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047686.1
NCBI id JAEQBD010000031.1
chromosome length 1000000
location 690615 ~ 698060 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229473.1
CTTGTTTCAGTCATACAGTCAATCTGAACGAGGAGCATGTCGTTCAAGATGACACAACACGACCGTGGCGTGAGAGTATGCGTGGGAGCGGTAGTGtatatacacagacaaaacagGCGTCTCGCTGTATATTTGAGACACGGCTTGTGATTCGCTCGCGGCACtgcgtcagccaatcagagggcAGCACTGAAGAGAAGCGTGAACGTCCCTTATGAGGCCTGTGAGCGACTCACGTAAAATGGCGACGGCGGAGCCGGAATTAAACTCAATTTCTTGTAAGAGTGAAGAGGAGAACTCAGAAGAGACCAATCAGGAGATTGTCAGCCCTGAGAGCTACATCAAACACCCCCTACAGAACAGatggtCTTTATGGTTCTTCAAAAATGACAAGAGCAAAACATGGCAGGCCAATCTCAGACTGATCTCCAAATTTGACACAGTGGAAGATTTCTGGGCGCTTTATAACCACATTCAGCTCTCCAGTAATTTGATGTCAGGGTGTGACTACTCACTTTTCAAGGATGGTATTGAGCCTATGTGGGAGGATGAGAGGAATAAAAGAGGAGGCCGCTGGCTCATCACTCTCAACAAGCAGCAGAGGAAGTATGACCTGGACCGCTTTTGGTTGGAAACTCTGCTGTGCCTCATCGGCGAGGCCTTCGACGACTACAGCGACGATGTGTGCGGGGCTGTAGTCAACATCCGAACGAAAGGAGATAAAATCGCCGTCTGGACAACTGACTACGAGAACAGAGAGGCCATAACGCACATAGGGAGGGTGTACAAGGAACGATTAAGCATCCCTATGAATATGACCATCGGCTATCAGTCTCATGCTGACACGGCCACTAAGAGCGGCTCCACCACTAAGAACAAGTTTGTGGTCTGAATATCTTCAAGGGCCTGGATCTCACTCTCTCCTGTCTTTTTCTCCGCCTCTTAAAACCAaagcaacagcaaaaaaaaaaaaaaaaaaaaaaactgactgaaCTGCCATGAAACCCCCTTTGCAAGTACACTTTTCCCAAAAGCCCTTCACAAGCACACTCCTGGACTCGCACTACCAATGAGGTTTGCAGCACAGACATAATTTGAGAATAACAGTACCTCTGCTGCTCCTTACATTCACACGCATTATAAGTATTACTTCTGTATCATGCTACACTACACGTTCTCGCTTCAACCCAccaaacactcacacaccacTACACCGTTTTcaccctgagaaaaaaaaaagagcatgcaCCTAATGAAGTTACATTCAATGTTTACCCCAGGCAAGTCTTCAGAGTTTGTAAAGTatttaataggtttttttttgtttttgttttttttttggaagaaattgtcaatttatttaatggcagaggaaagaaaatgtttgGAAGTGTTCTTTTATCCAGCAGCTTTGCTGCTTCAGTGCCTAatgaacataaacattttaatttattcagattaATCGTCAGCAGTTCACCGAGATGGTATCTGGTCGTTGAGTGAATGTAATCAAGCTAATCTTCATAGAGCTGCCTTACGTCTTTAAGCGTTAACTTGATTAAATTTGGGGGTTTGCAATTCAAgataagtgtttttatattgtgaatTTTTGATGCATCATAAGTTTACATTCCTTGTTAGAATAGTAAACTGTGGGATTTGTTTTGCAGTGCTGTAACAGATGAATTGTGCTTGTCTGGATGTCATTGGCTTGAGTTGGCTCTTCAATAAGATAGCAGCGTTATCGAATAGgccctgaaaataaaatagatttatgtTGA
>XM_043229475.1
CTTGTTTCAGTCATACAGTCAATCTGAACGAGGAGCATGTCGTTCAAGATGACACAACACGACCGTGGCGTGAGAGTATGCGTGGGAGCGGTAGTGtatatacacagacaaaacagGCGTCTCGCTGTATATTTGAGACACGGCTTGTGATTCGCTCGCGGCACtgcgtcagccaatcagagggcAGCACTGAAGAGAAGCGTGAACGTCCCTTATGAGGCCTGTGAGCGACTCACGTAAAATGGCGACGGCGGAGCCGAGTGAAGAGGAGAACTCAGAAGAGACCAATCAGGAGATTGTCAGCCCTGAGAGCTACATCAAACACCCCCTACAGAACAGatggtCTTTATGGTTCTTCAAAAATGACAAGAGCAAAACATGGCAGGCCAATCTCAGACTGATCTCCAAATTTGACACAGTGGAAGATTTCTGGGCGCTTTATAACCACATTCAGCTCTCCAGTAATTTGATGTCAGGGTGTGACTACTCACTTTTCAAGGATGGTATTGAGCCTATGTGGGAGGATGAGAGGAATAAAAGAGGAGGCCGCTGGCTCATCACTCTCAACAAGCAGCAGAGGAAGTATGACCTGGACCGCTTTTGGTTGGAAACTCTGCTGTGCCTCATCGGCGAGGCCTTCGACGACTACAGCGACGATGTGTGCGGGGCTGTAGTCAACATCCGAACGAAAGGAGATAAAATCGCCGTCTGGACAACTGACTACGAGAACAGAGAGGCCATAACGCACATAGGGAGGGTGTACAAGGAACGATTAAGCATCCCTATGAATATGACCATCGGCTATCAGTCTCATGCTGACACGGCCACTAAGAGCGGCTCCACCACTAAGAACAAGTTTGTGGTCTGAATATCTTCAAGGGCCTGGATCTCACTCTCTCCTGTCTTTTTCTCCGCCTCTTAAAACCAaagcaacagcaaaaaaaaaaaaaaaaaaaaaaactgactgaaCTGCCATGAAACCCCCTTTGCAAGTACACTTTTCCCAAAAGCCCTTCACAAGCACACTCCTGGACTCGCACTACCAATGAGGTTTGCAGCACAGACATAATTTGAGAATAACAGTACCTCTGCTGCTCCTTACATTCACACGCATTATAAGTATTACTTCTGTATCATGCTACACTACACGTTCTCGCTTCAACCCAccaaacactcacacaccacTACACCGTTTTcaccctgagaaaaaaaaaagagcatgcaCCTAATGAAGTTACATTCAATGTTTACCCCAGGCAAGTCTTCAGAGTTTGTAAAGTatttaataggtttttttttgtttttgttttttttttggaagaaattgtcaatttatttaatggcagaggaaagaaaatgtttgGAAGTGTTCTTTTATCCAGCAGCTTTGCTGCTTCAGTGCCTAatgaacataaacattttaatttattcagattaATCGTCAGCAGTTCACCGAGATGGTATCTGGTCGTTGAGTGAATGTAATCAAGCTAATCTTCATAGAGCTGCCTTACGTCTTTAAGCGTTAACTTGATTAAATTTGGGGGTTTGCAATTCAAgataagtgtttttatattgtgaatTTTTGATGCATCATAAGTTTACATTCCTTGTTAGAATAGTAAACTGTGGGATTTGTTTTGCAGTGCTGTAACAGATGAATTGTGCTTGTCTGGATGTCATTGGCTTGAGTTGGCTCTTCAATAAGATAGCAGCGTTATCGAATAGgccctgaaaataaaatagatttatgtTGA
>XM_043229476.1
TGGCTGAAAGTTGACATGGCTTGTTCCAGTCGCGAATTAAACTCAATTTCTTGTAAGAGTGAAGAGGAGAACTCAGAAGAGACCAATCAGGAGATTGTCAGCCCTGAGAGCTACATCAAACACCCCCTACAGAACAGatggtCTTTATGGTTCTTCAAAAATGACAAGAGCAAAACATGGCAGGCCAATCTCAGACTGATCTCCAAATTTGACACAGTGGAAGATTTCTGGGCGCTTTATAACCACATTCAGCTCTCCAGTAATTTGATGTCAGGGTGTGACTACTCACTTTTCAAGGATGGTATTGAGCCTATGTGGGAGGATGAGAGGAATAAAAGAGGAGGCCGCTGGCTCATCACTCTCAACAAGCAGCAGAGGAAGTATGACCTGGACCGCTTTTGGTTGGAAACTCTGCTGTGCCTCATCGGCGAGGCCTTCGACGACTACAGCGACGATGTGTGCGGGGCTGTAGTCAACATCCGAACGAAAGGAGATAAAATCGCCGTCTGGACAACTGACTACGAGAACAGAGAGGCCATAACGCACATAGGGAGGGTGTACAAGGAACGATTAAGCATCCCTATGAATATGACCATCGGCTATCAGTCTCATGCTGACACGGCCACTAAGAGCGGCTCCACCACTAAGAACAAGTTTGTGGTCTGAATATCTTCAAGGGCCTGGATCTCACTCTCTCCTGTCTTTTTCTCCGCCTCTTAAAACCAaagcaacagcaaaaaaaaaaaaaaaaaaaaaaactgactgaaCTGCCATGAAACCCCCTTTGCAAGTACACTTTTCCCAAAAGCCCTTCACAAGCACACTCCTGGACTCGCACTACCAATGAGGTTTGCAGCACAGACATAATTTGAGAATAACAGTACCTCTGCTGCTCCTTACATTCACACGCATTATAAGTATTACTTCTGTATCATGCTACACTACACGTTCTCGCTTCAACCCAccaaacactcacacaccacTACACCGTTTTcaccctgagaaaaaaaaaagagcatgcaCCTAATGAAGTTACATTCAATGTTTACCCCAGGCAAGTCTTCAGAGTTTGTAAAGTatttaataggtttttttttgtttttgttttttttttggaagaaattgtcaatttatttaatggcagaggaaagaaaatgtttgGAAGTGTTCTTTTATCCAGCAGCTTTGCTGCTTCAGTGCCTAatgaacataaacattttaatttattcagattaATCGTCAGCAGTTCACCGAGATGGTATCTGGTCGTTGAGTGAATGTAATCAAGCTAATCTTCATAGAGCTGCCTTACGTCTTTAAGCGTTAACTTGATTAAATTTGGGGGTTTGCAATTCAAgataagtgtttttatattgtgaatTTTTGATGCATCATAAGTTTACATTCCTTGTTAGAATAGTAAACTGTGGGATTTGTTTTGCAGTGCTGTAACAGATGAATTGTGCTTGTCTGGATGTCATTGGCTTGAGTTGGCTCTTCAATAAGATAGCAGCGTTATCGAATAGgccctgaaaataaaatagatttatgtTGA

Function

symbol description
eif4e Enables several functions, including DNA-binding transcription factor binding activity; RNA binding activity; and eukaryotic initiation factor 4G binding activity. Involved in G1/S transition of mitotic cell cycle; positive regulation of mitotic cell cycle; and regulation of translation. Located in cytoplasmic ribonucleoprotein granule; cytosol; and perinuclear region of cytoplasm. Part of RISC complex; eukaryotic translation initiation factor 4F complex; and mRNA cap binding activity complex. Implicated in autistic disorder.

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E-1A-like isoform X3

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229473.1 True 1781 mRNA 0.43 8 690615 698060
XM_043229475.1 False 1757 mRNA 0.43 8 690615 698060
XM_043229476.1 False 1555 mRNA 0.42 7 694834 698060

Neighbor

gene id symbol gene type direction distance location
LOC122332186 metap1,LOC107556924,LOC107747566,LOC107695030,LOC107733733,LOC107666440 coding upstream 23358 658117 ~ 667257 (+)
LOC122332204 adh8b,LOC107747567,LOC107666442,LOC107747568,LOC107733735,LOC107695031,LOC107585225,LOC107666441 coding upstream 115749 566459 ~ 574866 (+)
LOC122332199 LOC107747572,LOC107666443,LOC107556922 coding upstream 141978 547154 ~ 548637 (+)
LOC122332165 nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425 coding upstream 211748 476421 ~ 478867 (+)
LOC122332221 mark3a,LOC107721219,LOC107698147,LOC107582486 coding upstream 234485 446410 ~ 456130 (+)
LOC122332161 LOC107747531,LOC107698747,LOC107666489,LOC107733775 coding downstream 195731 893791 ~ 902091 (+)
G172784 adh8a,LOC107666441,LOC107747568,LOC107695031,LOC107733735,LOC107585225,LOC108263479 non-coding upstream 3409 553764 ~ 687206 (+)
G172800 NA non-coding upstream 17705 669363 ~ 672910 (+)
G172804 zgc:100846,cunh9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028,LOC107585223 non-coding upstream 177288 512574 ~ 513327 (+)
G172777 NA non-coding upstream 237315 441054 ~ 453300 (+)
G172755 NA non-coding upstream 339077 293647 ~ 351538 (+)
G172794 NA non-coding downstream 27167 725227 ~ 725907 (+)
G172737 NA other upstream 208583 465438 ~ 482032 (+)
G172778 mark3a,LOC107721219 other upstream 234535 446541 ~ 456080 (+)
LOC122332175 ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745 other downstream 91392 789452 ~ 811855 (+)

Expression


Co-expression Network