G22081


Basic Information

Item Value
gene id G22081
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000002
NCBI id null
chromosome length 1907571
location 1847138 ~ 1849864 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU24884
GGACTGTTTTCTGCACTTCTTCCCCCTTTCACTATCCCGGTAGTGAGAGTCCCATTTGCTTGGGACCCCCTTCGTGCTCCATCCAAGCCCTTCCTACTCCTGCCACCATTACTAGATAATGACCGAAGCCTTGTTGCTGGATTAGAGTTTCTGTTGTCCCCAGGTTCTTCACTCTTTTTCTTGGCATCTGATGAAGAAGGTACATTTAGATTCTTATCCCTACTTGTGCTTGTTCTGTGACGTGGCGTCCGAGGTCGCATGGTTGCAGAGGCACTGGAATCTCCAGCCGCAGAGAGTGAAGGGTATCGTTCACTTGCCAGAGGTGTGCTTCTGCAACTTTCCCCACCAGTATTATAGGCGCTTGTGCTCTCCTTGTCAGAGCGTTCCCTTTCCGGGATCTCGTTGATATCTGACAGTTCATGGTGGATCGCCTCTGCACCTCCACACCTTGCCTTTGCTCCTTTTTCTTCATCATCCTCTTCATCAGCTGGCCAGACCTTTAGGCAGCGTTGGCGCAACTGCTGCATCTTTTGAGCCCGCAAAACATTGCGCCACTTAAACTCCAGGTGGCGTATTTCCTCATCTAGAAGGGCAATCTCGTGCTGCATCAGGCTCTCGTTACAATTCATGTCTACAGGAACACCTCCTCCTGCAAAATCGCATCCTCCTGCGCCATGGTTCCTCCCGTCCAAAAGAAGAAGTGCATTTCCATTCTTCTCGTAAAGGCACCGGATCTCCAGTAGCTCTCTGTAACGTTCATATTCCTCTTCAGTTAATCCTGGCATCAGCACTCTGCTCGTCACTGAGCCCAGTGTTTCAGGAACCCCGTGATCTGCCACTCCCACCCCATCTGGCCCTAGCAGTGAGTCGTTGCTGTAATGGAATTCCCATCCATGCTGAGCAGCACGGAACTTGCGCAAACTGCCTGGTGTATTGGTGGCATTGGTCGTGCATGCACTGGTGGGATCATCCGCCAGCTCAGACGACTCTTCACAGCGTGTACTTTCATCTGTGCGACCCACCCCGCTGTCCAGCTCCTGGCTGTTATTGAGTGCAGTGTGCCACAAGTTGGGCCGACCAGCTCGGATCCCACTGATGTCACTCAGCAAGGAGCTAGCTTTCCTTTGGTGTTGAGGGCTGGGTAAGTTAGAGGCATTTTCCAAGTCCTCTAGATCCAGGCCCACACTCAATTCCAAATCCAGGTCATCAGCCTCATTCTTTCAAGAATGAAGATTTGGAATGTTGAAGTTAGAAAACAGGAAGGAAAAAAAATAATAAAAAATTAGCAAAATACTTTATAAATCATGCTACACTCTTAGAAGAAAAGGTTCAGTGGGTATCTGTATAGAACAATAGGATTCTTGACTCAATTTTAAAGAATGCTTTATTCTAAAAAGGTTCTATATACAAGGAGAAATCTCTTAAATTATTGAACGCTTTCATGTTTAACACTTTTTTTTTCTTTTCTTTTTTTTTTTTTCTAGTTATAAAGTACGATTTAACTCATAAAATGATCACATGATGATACCCCTAAAAGGTTCTATATATGAAGCACCTGATAGAACCCTTTCTTCTAAAAGTGTAGGCACTGTATGCAGAGAAATTTACTTTAAAAACATTCTGGTTGGTGAAACAGCAGCAAACACATTAACGTGTTTCAACAGCAGAGGGCAGTGTTTGTCCATGTAATCCCAAGTTTGGACGCTGTAACTGATTGTAGGGTCTTTTCCCATCTGTTGTAGGAGACATTTAAACGTGAGAAGTTTCTCAAATGAGCCACCTGTGCTGGGGAATATACTGGCCCAAGGGCTCACACACCATCTGGAGCTTCTATAACACACAAACACACACGCACACTTGTGTGCTACTGACCCCAAATCCTAAAACTGTAGAATCAGTGACTATTTCCCAAATGACCATCGCTGTTCATTAGTTCTTGTTTTCATCTCTTGGTTTAATGATTTTCCAGTAACTGTTTTTAAAGAATCTCAATTAGATTTTTTACTTTGTGCCAAACCCATGAATACAGCTGATAGATATCTAGAGAAAAATATTGAATTCAATTAAAGAACTGGACACAAATGGGTTTTATTCAGACCAGTGGTGTACATGAAGCTTTTTCATCTCCATCAGCTATAGACTTGTATGTTATATTGAACACAAATAAATATCTGTCTGTCTGGATTCAAAATCAGCACCCTCAGTATATCATGATTATTATATGCAAATACGATGCATTTTGTGAGATCTTGATTACCTTTTTTTCTTGTACAGCTTTGTGTCAAATAGCATCATGCTAAATGAACTTTATAAACATGCCTCAGACTTCAAATGTTGATTTGGTCTATTTGTATTCATGAACTGGGTGATTCCTCGGGGGGTTGCATTATGTTTTATTTAAATATTTACCAGTGGGATACGGACTGTTGCCATGGCTTCCACAAGGGCTAAAGATGATAAATCTGGATGTTAAAGCATGTTGACAGAGCACAAGGTTTTAGTCCAATCAATGAAGAGACTTGCACACAGTGTGAAGATATCGAGACATCATCATTTTTGTCTTTAACCAACTTGCTAGTCTGTTGATTCTGATTATCTCACTCTTTAGTCTGTTGTAGTCTGAGAAAGCTGCATGGAATACTGTAACCCACGATGTAACACACTCAAGCTGGCCTTCAATTTCAGTGTGATGGGCTACTTTTGTTTTTAGTTATTTGATCTCACTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU24884 True 2727 lncRNA 0.43 1 1847138 1849864

Neighbor

gene id symbol gene type direction distance location
CI01000002_01821988_01829384 ANKS1A coding upstream 17708 1821756 ~ 1829430 (+)
CI01000002_01755342_01805760 NA coding upstream 41366 1754468 ~ 1805772 (+)
CI01000002_01650177_01674596 UHRF1BP1 coding upstream 172481 1650177 ~ 1674657 (+)
CI01000002_01546448_01547246 NA coding upstream 299664 1546448 ~ 1547474 (+)
CI01000002_01474926_01477596 NGFA coding upstream 369225 1474926 ~ 1477913 (+)
G22101 NA non-coding upstream 153744 1692922 ~ 1693394 (+)
G22100 NA non-coding upstream 154688 1692246 ~ 1692450 (+)
G22067 NA non-coding upstream 200880 1586743 ~ 1646258 (+)
G22048 NA non-coding upstream 324423 1522422 ~ 1522715 (+)
G22022 NA non-coding upstream 361822 1485062 ~ 1485316 (+)
G22110 NA non-coding downstream 17780 1867644 ~ 1868138 (+)
G22112 NA non-coding downstream 28065 1877929 ~ 1879570 (+)
G22113 NA non-coding downstream 30565 1880429 ~ 1880761 (+)
G21930 NA other upstream 438081 1387614 ~ 1409057 (+)
G21272 NA other upstream 1321341 523007 ~ 525797 (+)
G21254 NA other upstream 1366683 479147 ~ 480455 (+)
G21239 NA other upstream 1383222 463555 ~ 463916 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1379959 LOC106567238 unknown NC_048580.1 CM023234.2 46945257 ~ 46948217 (+)