G173275 (fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346)


Basic Information

Item Value
gene id G173275
gene name fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1206216 ~ 1445995 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU256826
gacaaattagtattttttctgttgaattatttttatctgaTCTGTTCAAAAGCTCCTAGACAGCAAGTTGGCTCAGTGTAGCGATGCAGAGGATTCAAGTCACATCATCTCTACTGGAGACGAAGCTGCTGCAGGCAATCGTGAGCTCCGACACAGAAGTGTGCCCACCCAAGGAGGTGAGGATGCAGATTCAACCGGGAAGGCCCAGGTGAAGCTTTCTGTTGTGTATTCATCTGAGGAGAACCGACTTGTCATTACTGTCCATGCCTGCAGGAACTTGCCATCCTACTCCAAGGATCCTCCAGACACGTACATCTCCTTTATTTTACTTCCGGACAAGAACCGGATCACCAAAAGAAAGACCACTATTAAGAAGAAAAGCCTCAAACCTGAGTTCAATGAGAGATTTGATTTTGACATGTCACATGAAGAAGCTAAGCAGAAACATCTTGAAGTGTCTGTCAAGAACAGCGTTTCCTTCATGAGTCGTGAAAAAGAGCTTCTTGGCAAGCTTCTGATAGATCTGAGTCAGCTGGATCTCAAAGCAGCAGTATCACAGTGGTACAGCTTGTCACATGAGACCAACTGACTGACCGTCCTTCCCATGTTGACTTCATTTGCAATCATTCATAGTGGAGCCTGATTTCACAGATGTTCTCCTGACACTAGCAGAGGGTCCTAGAGCCGGGCGTCAGGATAAAGATTGCATCATGTAACCGCTGTGCAACTAGCTTTCGCACAAAAAATATAGCCTGCTTGATTTCCATCTTAAACAAATGATGTTAGCACAAGAAGGCTATGAGGGCGCCACCTTGAGTCAACTCGGCAGCTGTTggagaaatgttacattttttaaagtatttgtaGCTTTTTAGCTCCTGCACTTTATGGGTCATTGAGAATGCAGCGGTGAGAAGTCAGAGCTTCTGTTCAGCAgtgtttattgcatttcattCCCCAAAAAAATAGTTGTGGAGTTGATTATTTCCAAATGAATCCACATCATGCATTTCAAAATCACCAAAttgctatatattattattatgattttttttttaagaaagcctATCAAGAACgaatcattttatattgtttcctcttttaatatctaataagggtttagatattatttaaacatttcttgtaTCGTTGGTTTCCATATTTTAGCCTCATGTTTGTAACTAGACTATTCATTTTACACATATCAAAAAACGTGTTGATCACTGTGCAAAGTGAGTACCTTCccaaagatttaaaatatattttatgtgtgtatgttttaacCATAGACTGTAACGAAGGTTCAAACCAAAAGGCagcatgaatatttaaaatgtaagtgcCAATGAGTCGCTGAGAGACAGATGCTcaacaatgttacaaaaatgctTGAGTTGTGTCTTAAAGTACAGAATTAGTTCCTCGTGAGAAAGACAATTTTGACAGAAAACAGAGATGCTTTTGACGTTGAAATGTAGTGCTCCTGCACCCTGTTAACCAGAGCCTGTATCGccgttttaataaatatgccaTTTGCACTT
>TU256841
GAGCAGAAGAGCTCACTGGGAGTGGTGCGGACATTGTGCAATATGCGAATAGAACACGCTACTCGTGTGAAGTTATAATGCAGCTGCGCACGGACCCCGCCGCTGCCGCTGACCTCCGTCAAGTGTTCAAGATAAAGTCGCGCAGACAGTGATAGCGGAGACCGGACGCGTACAGGACGAACCCGCAGAATAAGAGTGTGCCTGTGAGACTGGAGGAGAGATGGGGAACGCGGGGAGCATGAACCAACACACTGACCCCAGAGGACACCACATGCCCCTCAAACTGCCCATGCCCGAGCCGGCCGAGCTGGAGGAGAGATTTGCGCTCGTCCTGAACTCAATGAACTTGCCTCCAGACAAAGCAAGATTACTTCGGCAGTACGACAACGAGAAAAAATGGGAACTCATTTGCGACCAGGAACGATTCCAAGTGAAGAATCCTCCTCACACATACATCCACAAGCTACAGAGTTATCTTGACCCAGCTGTTACCAGGAAGAAGTTCAGGAGGAGAGTGCAGGAGTCCACACAGGTCCTGCGGGAGCTGGAAATCTCATTACGGACCAATCACATCGGGTG

Function

symbol description
fmnl2a Predicted to enable actin filament binding activity. Predicted to be involved in cell migration; cortical actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol. Is expressed in several structures, including blood vessel; nervous system; neuroectoderm; optic cup; and polster. Orthologous to human FMNL2 (formin like 2).

NR:

description
PREDICTED: extended synaptotagmin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256826 True 1541 lncRNA 0.40 6 1443671 1445995
TU256841 False 579 TUCP 0.54 4 1206216 1232468

Neighbor

gene id symbol gene type direction distance location
mylka mylka,mylk,LOC107734487,LOC107745269 coding upstream 1534 1152268 ~ 1204682 (+)
mettl8 NA coding upstream 398131 801991 ~ 808085 (+)
itga6a itga6a,itga6,LOC107671295,LOC107657398,LOC107745248,LOC107742949,LOC107588238 coding upstream 431702 752997 ~ 774514 (+)
dlx1a dlx1a,dlx1,LOC107742982,LOC107745256,LOC107588239 coding upstream 472605 723505 ~ 733611 (+)
hat1 hat1 coding upstream 510827 678146 ~ 695389 (+)
LOC122332318 fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404 coding downstream 650 1446645 ~ 1487634 (+)
sik1 sik1,LOC107715911,LOC107557923,LOC107559505,LOC107721609 coding downstream 85611 1531606 ~ 1541851 (+)
cfap91 maats1,LOC107551982,LOC107559508,LOC107721571 coding downstream 188182 1634177 ~ 1646598 (+)
nr1i2 nr1i2,LOC107715907,LOC107661291 coding downstream 201484 1647479 ~ 1668946 (+)
LOC122332307 NA coding downstream 340551 1786546 ~ 1789324 (+)
G173205 NA non-coding upstream 342915 862722 ~ 863301 (+)
G173103 NA non-coding upstream 590697 506529 ~ 615519 (+)
G173083 NA non-coding upstream 794393 346582 ~ 411823 (+)
G173049 LOC107748309,LOC107691421,LOC107589979 non-coding upstream 922655 159724 ~ 283561 (+)
G173292 NA non-coding downstream 24456 1470451 ~ 1491333 (+)
G173294 NA non-coding downstream 48625 1494620 ~ 1494953 (+)
G173295 NA non-coding downstream 49105 1495100 ~ 1495413 (+)
G173410 NA non-coding downstream 96540 1542535 ~ 1552427 (+)
G173449 NA non-coding downstream 223557 1669552 ~ 1691907 (+)
tlk1a tlk1a,tlk1,LOC107671313 other upstream 370887 809359 ~ 835329 (+)
G173104 NA other upstream 587155 508342 ~ 619061 (+)
si:ch211-214p13.8 NA other downstream 144389 1590384 ~ 1598734 (+)
si:ch211-214p13.7 NA other downstream 170614 1616609 ~ 1620452 (+)
G173493 NA other downstream 468803 1914798 ~ 1917331 (+)
G173505 NA other downstream 517216 1963211 ~ 1964710 (+)

Expression


Co-expression Network