G173295


Basic Information

Item Value
gene id G173295
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1495100 ~ 1495413 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU256877
ttggatgtCTTTCTTATCTCACACTCCTAATTCAATTCCTCAGCTCGGCACTTCAGCGTGTTAGGGCTGCAGCACAGAAAAATGCGAAAagtattgattattattttctaaatgcactGCATTTCCTGTCCCCCGTCTGCCAGGCTTCGCTTTCCCAGAGCTCTGCTGTTATCTTAACCAGAGGAATGTGGGCTCGTACTCTATCAGCTGGTAAACATCACACTGTTTTTAGCTTTGCCTCCTCCTACCCCGTCTCTGTTTGTCTAGGCCGGTCAGACTGACCATGGGGGGTTGTGGCCATCGTTGCAGTTGCG

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05416 Viral myocarditis

RNA

RNA id representative length rna type GC content exon number start site end site
TU256877 True 314 lncRNA 0.48 1 1495100 1495413

Neighbor

gene id symbol gene type direction distance location
LOC122332318 fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404 coding upstream 7466 1446645 ~ 1487634 (+)
LOC122332266 LOC107737514,LOC107673110,LOC107591117,LOC107593905,LOC107716156,LOC107668346 coding upstream 49101 1436228 ~ 1445999 (+)
fmnl2a fmnl2a,LOC107745270,LOC107559537,LOC107657404 coding upstream 234935 1206192 ~ 1260165 (+)
mylka mylka,mylk,LOC107734487,LOC107745269 coding upstream 290418 1152268 ~ 1204682 (+)
mettl8 NA coding upstream 687015 801991 ~ 808085 (+)
sik1 sik1,LOC107715911,LOC107557923,LOC107559505,LOC107721609 coding downstream 36193 1531606 ~ 1541851 (+)
cfap91 maats1,LOC107551982,LOC107559508,LOC107721571 coding downstream 138764 1634177 ~ 1646598 (+)
nr1i2 nr1i2,LOC107715907,LOC107661291 coding downstream 152066 1647479 ~ 1668946 (+)
LOC122332307 NA coding downstream 291133 1786546 ~ 1789324 (+)
LOC122332310 NA coding downstream 298457 1793870 ~ 1816106 (+)
G173294 NA non-coding upstream 147 1494620 ~ 1494953 (+)
G173292 NA non-coding upstream 3767 1470451 ~ 1491333 (+)
G173282 NA non-coding upstream 227158 1266745 ~ 1267942 (+)
G173281 NA non-coding upstream 229580 1264083 ~ 1265520 (+)
G173205 NA non-coding upstream 631799 862722 ~ 863301 (+)
G173410 NA non-coding downstream 47122 1542535 ~ 1552427 (+)
G173449 NA non-coding downstream 174139 1669552 ~ 1691907 (+)
G173465 NA non-coding downstream 238110 1733523 ~ 1734755 (+)
G173454 lrrc58b,lrrc58,LOC107721825,LOC107559501,LOC102790154,LOC107715899,LOC107688662,LOC107551992 non-coding downstream 243955 1739368 ~ 1747805 (+)
G173468 NA non-coding downstream 280888 1776301 ~ 1776839 (+)
G173275 fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346 other upstream 49105 1206216 ~ 1445995 (+)
G173289 itga7,LOC107684006,LOC107713866 other upstream 76190 1415699 ~ 1418910 (+)
G173286 LOC107566748,LOC107657405,LOC107745272,LOC107559530,LOC107671291 other upstream 101926 1374278 ~ 1393174 (+)
G173276 NA other upstream 233643 1199337 ~ 1261457 (+)
tlk1a tlk1a,tlk1,LOC107671313 other upstream 659771 809359 ~ 835329 (+)
si:ch211-214p13.8 NA other downstream 94971 1590384 ~ 1598734 (+)
si:ch211-214p13.7 NA other downstream 121196 1616609 ~ 1620452 (+)
G173493 NA other downstream 419385 1914798 ~ 1917331 (+)
G173505 NA other downstream 467798 1963211 ~ 1964710 (+)

Expression


Co-expression Network