si:ch211-214p13.8


Basic Information

Item Value
gene id si:ch211-214p13.8
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1590384 ~ 1598734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU257087
AAAATGAGTGTTCAGTCAAACGATTCGGATGGTGACTGTAAGGATTAGgctgaaattatttatatttagagaCCATCTGGGCACACCTGGTTGTATTCAAGATGGATTCAGCAAACCAAAGAAAGACGTCTTTGATCCATTACATGCTGATAGTTTTCTTCCTGAATGTGAGCACGGATGCACTAGgTCATGCCGTCAAATGTCCTCTCTTGAAAGTTCAGAGAGGGACGGTTTATAAAGTGTTCATAAACAAGACTTTCAAGATCTCCTGTGAGCTGATGTTTTGTGAACACCAGAAAGTCAATGTGACGTGGACTAAAGTAATCTTAAACAGCTGGACTCCGGTGTCTGAATCAGATCAGATCTCTACATCACAGATCTACTCATCATCTCACACAAATACGTTGACTTCATATTTAACTTTCACGAATATATCAAAGCATCACGAAGGCTCTTACAGATGTGAACTAAACCTACCACACATCTCCATGTACAGCCATCAAATAAACGTTTCTGTCTCAGAGAcgacagaaagagaaaacactGACCTCAGCTCAGGTTCGTATCCGTGGTGGCTGCCGTATCTCTTCATCTGTTCGGGGGCACTGATCCTGCTCGTTCTAGTAATGTCCATCCTGTGGATCAGTGCATGTAAAAGT
>XM_043229627.1
TGGTATCTGGATTTTTGCTCCGTTTAGTTTGTCATGGATTGACCCTGGCTTGATTTCTCAGACTGCTCTCTGCTTTCCTCCTAAATACCGagaCCATCTGGGCACACCTGGTTGTATTCAAGATGGATTCAGCAAACCAAAGAAAGACGTCTTTGATCCATTACATGCTGATAGTTTTCTTCCTGAATGTGAGCACGGATGCACTAGgTCATGCCGTCAAATGTCCTCTCTTGAAAGTTCAGAGAGGGACGGTTTATAAAGTGTTCATAAACAAGACTTTCAAGATCTCCTGTGAGCTGATGTTTTGTGAACACCAGAAAGTCAATGTGACGTGGACTAAAGTAATCTTAAACAGCTGGACTCCGGTGTCTGAATCAGATCAGATCTCTACATCACAGATCTACTCATCATCTCACACAAATACGTTGACTTCATATTTAACTTTCACGAATATATCAAAGCATCACGAAGGCTCTTACAGATGTGAACTAAACCTACCACACATCTCCATGTACAGCCATCAAATAAACGTTTCTGTCTCAGAGAcgacagaaagagaaaacactGACCTCAGCTCAGGTTCGTATCCGTGGTGGCTGCCGTATCTCTTCATCTGTTCGGGGGCACTGATCCTGCTCCTTCTAGTAATGTCCATCCTGTGGATCAGTGCATGTAAAAgttcaaagagaaaaaacacacagagaacacaggTCCAGTACACAGCAACGTCTGTCCAGTCGCCACCGAGCCCCAGTGTTCAGAAACGGGACGAAGAAACACAGAAGCGCTCAATCACAGCAACACATTAACATCACACCCCGGACAGTCTCCATCACACGTGTCAGACTCCAGCGATGATCTTTTGCATAACAGGAGAGAAAGCAGATCGAGTCAGGTTGTGTACGCGTCTCTGCATCACCTCGCACCCCCGCCCTCATCATATACCACATCTTGTCAGACACAGGAGGAGGTTTCGGAGTATGCATCTATCAGGTTCCGGGTCTCCTGATTTTCTGTCTGCATTAACAGTGAAACCACGTTTTTAAGGGTCCAAAATTAAAGAGTGAGGTGGTTTTGTGCGACCTTGCGGTACAGTTGATCTACTCCGTCTGACAGGAAGCAGGAGATGTGTGCGTGTTTTCACACGGCACAGTACAAATCATCACATGGTTAACTCATTACATCACGGAAAATCATTGCTGTTCAGTTCAGTGTGGTTTTTATCAAGTCAAGCTCGCACCACTAATCACGTGCGTCTGATGCAACAGGTCTGAGTGTAAAGCCGTAAAACTTAAATGAATGATAGAATTACTAATTTGAAGCACAAGGATATGCGTGCAGATATTGATGTTTTGAGCCTTAAACGCATGAGGAATGGTGTATTGCTTATGCCTGggtttgtaaatgtgtttgttgtaaTGTTGTATATTATACGTCAGGGTTTTTTTGAAGGGACAACAAAAAGAGTActaataaaatggcaaaagttaaaataataacagca

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU257087 False 659 TUCP 0.42 3 1591651 1598734
XM_043229627.1 True 1504 mRNA 0.43 6 1590384 1594366

Neighbor

gene id symbol gene type direction distance location
sik1 sik1,LOC107715911,LOC107557923,LOC107559505,LOC107721609 coding upstream 48533 1531606 ~ 1541851 (+)
LOC122332318 fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404 coding upstream 102750 1446645 ~ 1487634 (+)
LOC122332266 LOC107737514,LOC107673110,LOC107591117,LOC107593905,LOC107716156,LOC107668346 coding upstream 144385 1436228 ~ 1445999 (+)
fmnl2a fmnl2a,LOC107745270,LOC107559537,LOC107657404 coding upstream 330219 1206192 ~ 1260165 (+)
mylka mylka,mylk,LOC107734487,LOC107745269 coding upstream 385702 1152268 ~ 1204682 (+)
cfap91 maats1,LOC107551982,LOC107559508,LOC107721571 coding downstream 35443 1634177 ~ 1646598 (+)
nr1i2 nr1i2,LOC107715907,LOC107661291 coding downstream 48745 1647479 ~ 1668946 (+)
LOC122332307 NA coding downstream 187812 1786546 ~ 1789324 (+)
LOC122332310 NA coding downstream 195136 1793870 ~ 1816106 (+)
si:ch211-141e20.2 NA coding downstream 221142 1819876 ~ 1829982 (+)
G173410 NA non-coding upstream 37957 1542535 ~ 1552427 (+)
G173295 NA non-coding upstream 94971 1495100 ~ 1495413 (+)
G173294 NA non-coding upstream 95431 1494620 ~ 1494953 (+)
G173292 NA non-coding upstream 99051 1470451 ~ 1491333 (+)
G173282 NA non-coding upstream 322442 1266745 ~ 1267942 (+)
G173449 NA non-coding downstream 70818 1669552 ~ 1691907 (+)
G173465 NA non-coding downstream 134789 1733523 ~ 1734755 (+)
G173454 lrrc58b,lrrc58,LOC107721825,LOC107559501,LOC102790154,LOC107715899,LOC107688662,LOC107551992 non-coding downstream 140634 1739368 ~ 1747805 (+)
G173468 NA non-coding downstream 177567 1776301 ~ 1776839 (+)
G173477 NA non-coding downstream 237096 1835830 ~ 1838337 (+)
G173275 fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346 other upstream 144389 1206216 ~ 1445995 (+)
G173289 itga7,LOC107684006,LOC107713866 other upstream 171474 1415699 ~ 1418910 (+)
G173286 LOC107566748,LOC107657405,LOC107745272,LOC107559530,LOC107671291 other upstream 197210 1374278 ~ 1393174 (+)
G173276 NA other upstream 328927 1199337 ~ 1261457 (+)
tlk1a tlk1a,tlk1,LOC107671313 other upstream 755055 809359 ~ 835329 (+)
si:ch211-214p13.7 NA other downstream 17875 1616609 ~ 1620452 (+)
G173493 NA other downstream 316064 1914798 ~ 1917331 (+)
G173505 NA other downstream 364477 1963211 ~ 1964710 (+)

Expression


Co-expression Network