G173454 (lrrc58b,lrrc58,LOC107721825,LOC107559501,LOC102790154,LOC107715899,LOC107688662,LOC107551992)


Basic Information

Item Value
gene id G173454
gene name lrrc58b,lrrc58,LOC107721825,LOC107559501,LOC102790154,LOC107715899,LOC107688662,LOC107551992
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1739368 ~ 1747805 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU257113
CTGGCGAGACTCTCTATCTCTGCTGGGATGCTCTTCAGCCGGTTTCCTCCCAGGGACAGAGACTGCAGCCGCGGCAGCTGCAGGCACTGGCTGGGCATCTCCTCGAAGCGGTTCCCGCTGAAGTTCAACACTTCCAGCTGCAGGGAGCCGAAGTGTTTGGGCAGGGAGAACTCGTTCAAGCGATTGTTCTTGGCTACGAGGGTTTTGAGCTTGGTCAGGCGGGTGATGTCTTCGCAGAGGACCGACAGCGAGTTGTTGCTGAGGTCGAGGAGCTCCAGGTTGGAGAATAAAGAGACGGACTCGGGTAAAAGCGTCAGCCGGTTGTAGCACAGAGTTTCTGGATGCAACAGCATTTCTGAGTTTTGCCTGCTGGCTCAACAAAGACTTTGTTAACTTCACGCTGGTGCAGACTGATGCAAGGCAGACAGAGACTCACTCTTCTCAGGAGGGTTGAAGCCTGGTTTTAGGCAGTTGAGGAACTCATCAAAGCTCAGCTTCCAGTCAGCGTTCTCATCCGAGAGCTCAATAAGTGCGTCCACGCAAAGGCTCCTGTGAGACACATGTAGGGATCATTTAAACATTCCTTTCAGAACAGCACATTTTATTCAGATGTGATCACCAGGGTCAAAAATACAAgacttgtttgtgttttcaataCGCTATCTAGCTGACCGGATACGCAGTAGTGCACAGTTGTGCAGTGAAATGTTTGCTTGGCTTTATCGGTGTTTGTAGAtggagttttttttcccctctgggTCATCCTGACAGACGGATGGACACTAGCTCACATAACCTCTACTGTAAGAGAAACAGGAAGAAATCCAGTGTGACAGAGATGATTATAACTATTGTGTAGGCTAGTGGTTAAAACGATTGTTCACTCAAAAACCCAAATTCATTTCTCATTTAGAAAAGAGTAGGCCTCTCTTTTGACCTGCTTATCATGtggtgtgtaacacagctcttaGTGAATAAAAAAGATCTTCTGCAAAGATTTatatctgaaagtgcaccgtgtgtaaagttattgtctcaatcattgaaacgagtcgtttttaaaacaaatcctaaGCCCTTAGATGTAGACATCAACATTAGCATATTACTCACACACTCTGTCTTTTTgctttggtctgaatgaaaatgcgaaTTCATTCTTAACCACTAGGTGGTGCTTTTGGGGCAGTAAAAATAGAGATTCCCTGGTAACCGGGttatttgatcaataatactgtaaaaaacagtaatgtgaaatattattacaatttaaaactgttttttaatatattttcaaacgTTATTTATTCCTGCttaagctgaatttttagcataattacgccttcagtgtcatatgatcctcaGAATTTTCTATTACTATTATCAATGTTCTTAACATTATCACAGTTGTGcaggttaatatttttgtagacacgggtttaattattttatttatttattttaattgttttttttttggggtgggaGGGGGTATTTGATTAAGAGAATGTTtgaaattaaactttatttcacatacaatatttacaaCAGGGTAAAAGTctcctttttaaattaaattcttacaGACgccatatttttaaacagtagtgtatatatgtgattatgtgagtgtgtgtgtgtgtgtgtgtgtgttttaacctGAGCAGGCGGTTGTTCTCCTCCTCAGCGTAAGAGTTCATCTGAACCGCTGTTTCATTGTGCTGAATGAACTTGAGCAGCTCTGCAGAATCCATCTGAGAGTCTCCATTATCATAATTCTACAAAAGACAAGTGACCAGTGATGCCGCATCAGCTACTTTGAAACTTACATATCATTCTGTCGGTTTAATCTTATCTCTGCGGTTGGTCAGGAGACTGTACTCTGCCTGATACGGCTGATTTTGACATGTTCACCAATAAACAAGAGGTAAAGGACATGATCCTGACTGAGTCAAACTTCCACCAACTGGAGGAATACTTCacttaaaatgactattttgcTTTCATGAATTCACCCTTGTGCTGttacaaacctaaaaaaaagacttttctgTCAAGGGGACAAAAGCTGATTTCCGCTGTTTTGTCAATTGAACAAATtca

Function

symbol description
lrrc58b Orthologous to human LRRC58 (leucine rich repeat containing 58).
lrrc58 Orthologous to human LRRC58 (leucine rich repeat containing 58).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 58-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257113 True 2103 lncRNA 0.41 2 1739368 1747805

Neighbor

gene id symbol gene type direction distance location
nr1i2 nr1i2,LOC107715907,LOC107661291 coding upstream 70422 1647479 ~ 1668946 (+)
cfap91 maats1,LOC107551982,LOC107559508,LOC107721571 coding upstream 92770 1634177 ~ 1646598 (+)
sik1 sik1,LOC107715911,LOC107557923,LOC107559505,LOC107721609 coding upstream 197517 1531606 ~ 1541851 (+)
LOC122332318 fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404 coding upstream 251734 1446645 ~ 1487634 (+)
LOC122332266 LOC107737514,LOC107673110,LOC107591117,LOC107593905,LOC107716156,LOC107668346 coding upstream 293369 1436228 ~ 1445999 (+)
LOC122332307 NA coding downstream 38741 1786546 ~ 1789324 (+)
LOC122332310 NA coding downstream 46065 1793870 ~ 1816106 (+)
si:ch211-141e20.2 NA coding downstream 72071 1819876 ~ 1829982 (+)
fgf9 LOC107688669,LOC107572408 coding downstream 97004 1844809 ~ 1847284 (+)
tmprss3a tmprss3,LOC107748899,LOC107713697 coding downstream 101765 1849570 ~ 1861337 (+)
G173465 NA non-coding upstream 4613 1733523 ~ 1734755 (+)
G173449 NA non-coding upstream 47461 1669552 ~ 1691907 (+)
G173410 NA non-coding upstream 186941 1542535 ~ 1552427 (+)
G173295 NA non-coding upstream 243955 1495100 ~ 1495413 (+)
G173294 NA non-coding upstream 244415 1494620 ~ 1494953 (+)
G173468 NA non-coding downstream 28496 1776301 ~ 1776839 (+)
G173477 NA non-coding downstream 88025 1835830 ~ 1838337 (+)
si:ch211-214p13.7 NA other upstream 118916 1616609 ~ 1620452 (+)
si:ch211-214p13.8 NA other upstream 140634 1590384 ~ 1598734 (+)
G173275 fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346 other upstream 293373 1206216 ~ 1445995 (+)
G173493 NA other downstream 166993 1914798 ~ 1917331 (+)
G173505 NA other downstream 215406 1963211 ~ 1964710 (+)

Expression


Co-expression Network