LOC122332266 (LOC107737514,LOC107673110,LOC107591117,LOC107593905,LOC107716156,LOC107668346)



Basic Information


Item Value
gene id LOC122332266
gene name LOC107737514,LOC107673110,LOC107591117,LOC107593905,LOC107716156,LOC107668346
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1436228 ~ 1445999 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043229557.1
ATGACCTTCTATAGGGACAAGGACGTGTGGAAGCCAGAGCCGTGTCGTATCTGTGTTTGCGACACCGGCACGGTCCTGTGCGACGAAATCATCTGCGAGGAGTTGAAAGACTGTCCCAAACCTGAGATCCCGTTTGGGGAGTGCTGTCCATGGTACACTTTAAAGGACGCACCATCAGGTCAGGTTCATCTCAAGCTAGAATGGCTCTCTCTGCTCCCCTCTGCAGAGCGCCTAAGCGAAgTGCTGGAgaggaataaaaacattacaatatatgGAAAGACAGCAGATCCTCCTTCTGCTGCTATTTTGACAGTTTATCTTGACCGGGCACAAGATCTACCTTTTAAGAAAGGCAACAAGGACCCCAGCCCCATGGTGCAGATTTCTGTCCAGGATACCACCAAAGAAAGCAGGACGGTGTATGGGACTAACAATCCAGTATGGGaagatgcatttacattttttattcaggaCCCACGCAAACAAGATATCGACATCCAGGTGAAGGATGATGACAGGGCTTTGACTCTGGGGAGTTTGTCTGTCCCTTTGTCCCGTCTGCTCTCCAGTGCTGAGCTCAGCATGGATCAATGGTTTCAGCTAGAAAAGTCCGGACCGGCCAGCCGTATCTacatcacagctatgctgaggGTGCTGTGGCTGAATGAAGAAGCAATCCTTACCACACCTGTGACTCCGTTACCCGGAGATGGAGATATTGAAGCAGAAGTGTCTTCAGGGGTTTCAAAATTAATCCCTGTTTCAAAACGTCCCGAGCACACTAGTCCAGACAGCAGTTTTGCATCTGAGGGTGTTCTGCGGATCCACCTGTTAGAAGCCCAGAATCTCATTGCTAAGGACAATATAATGGGTGGGATTGTAAAGGGAAAGAGTGACCCGTATGTGAAGATCCGAGTAGGAGGACTGGCATTCAAGAGTCAGGTCATCAAAGAGAACCTCAACCCCATCTGGAATGAACTTTATGAGGTGATCTTGACCCAGCTGCCAGGTCAGGAGGTGGAGTTTGATCTTTATGATAAAGACATTGATCAGGACGACTTCCTTGGCAGGGTTAAAGTGAGTCTCAGAGAACTCATCAGCTCTCAGTTTACTGATCAGTGGTATACTCTGAATGATGTGAAGTCTGGACGAGTTCATCTTGTGTTGGAATGGGTGCCTAAAGTTTCAGATCCCAACAGACTTGAACAGATCCTACGTTACAATTATCGTCAGTCTTACCTGAATAAAACGGTTCCTTCCGCTGCTCTGCTTTCTGTGTATGTTGAGAGAGCACATGGTCTGCCTTTAAAAAAGAGCGGAAAGGAGCCGAAAGCAGGAGCAGAATTGTGCCTCAAAAATGTGTTCTACCGGACCAAAGTTGTCAATAGCTCAACTTCTCCACAGTGGGATGAAGCTTTTCATTTCCTGATTCATAATCCAAGAGAAGACACACTTATAGTCAAActcTCTCACAGCTGGGGTCAGGCTCTGGGCTCTCTTGTGCTTCCTGTGAAGGAGCTGATAGATGAGAAGGATCTAGTGATGGACCGTTGGTTCAGTCTGGATGGAGCCATGCCTGAAAGTCAGATTCTGCTGAGAGCTGAACTCAAGCTCCTAGACAGCAAGTTGGCTCAGTGTAGCGATGCAGAGGATTCAAGTCACATCATCTCTACTGGAGACGAAGCTGCTGCAGGCAATCGTGAGCTCCGACACAGAAGTGTGCCCACCCAAGGAGGTGAGGATGCAGATTCAACCGGGAAGGCCCAGGTGAAGCTTTCTGTTGTGTATTCATCTGAGGAGAACCGACTTGTCATTACTGTCCATGCCTGCAGGAACTTGCCATCCTACTCCAAGGATCCTCCAGACACGTACATCTCCTTTATTTTACTTCCGGACAAGAACCGGATCACCAAAAGAAAGACCACTATTAAGAAGAAAAGCCTCAAACCTGAGTTCAATGAGAGATTTGATTTTGACATGTCACATGAAGAAGCTAAGCAGAAACATCTTGAAGTGTCTGTCAAGAACAGCGTTTCCTTCATGAGTCGTGAAAAAGAGCTTCTTGGCAAGCTTCTGATAGATCTGAGTCAGCTGGATCTCAAAGCAGCAGTATCACAGTGGTACAGCTTGTCACATGAGACCAACTGACTGACCGTCCTTCCCATGTTGACTTCATTTGCAATCATTCATAGTGGAGCCTGATTTCACAGATGTTCTCCTGACACTAGCAGAGGGTCCTAGAGCCGGGCGTCAGGATAAAGATTGCATCATGTAACCGCTGTGCAACTAGCTTTCGCACAAAAAATATAGCCTGCTTGATTTCCATCTTAAACAAATGATGTTAGCACAAGAAGGCTATGAGGGCGCCACCTTGAGTCAACTCGGCAGCTGTTggagaaatgttacattttttaaagtatttgtaGCTTTTTAGCTCCTGCACTTTATGGGTCATTGAGAATGCAGCGGTGAGAAGTCAGAGCTTCTGTTCAGCAgtgtttattgcatttcattCCCCAAAAAAATAGTTGTGGAGTTGATTATTTCCAAATGAATCCACATCATGCATTTCAAAATCACCAAAttgctatatattattattatgattttttttttaagaaagcctATCAAGAACgaatcattttatattgtttcctcttttaatatctaataagggtttagatattatttaaacatttcttgtaTCGTTGGTTTCCATATTTTAGCCTCATGTTTGTAACTAGACTATTCATTTTACACATATCAAAAAACGTGTTGATCACTGTGCAAAGTGAGTACCTTCccaaagatttaaaatatattttatgtgtgtatgttttaacCATAGACTGTAACGAAGGTTCAAACCAAAAGGCagcatgaatatttaaaatgtaagtgcCAATGAGTCGCTGAGAGACAGATGCTcaacaatgttacaaaaatgctTGAGTTGTGTCTTAAAGTACAGAATTAGTTCCTCGTGAGAAAGACAATTTTGACAGAAAACAGAGATGCTTTTGACGTTGAAATGTAGTGCTCCTGCACCCTGTTAACCAGAGCCTGTATCGccgttttaataaatatgccaTTTGCACTTtcaa

Function


NR:

description
PREDICTED: extended synaptotagmin-1-like isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043229557.1 True 3104 mRNA 0.44 22 1436228 1445999

Neighbor


gene id symbol gene type direction distance location
fmnl2a fmnl2a,LOC107745270,LOC107559537,LOC107657404 coding upstream 176063 1206192 ~ 1260165 (+)
mylka mylka,mylk,LOC107734487,LOC107745269 coding upstream 231546 1152268 ~ 1204682 (+)
mettl8 NA coding upstream 628143 801991 ~ 808085 (+)
itga6a itga6a,itga6,LOC107671295,LOC107657398,LOC107745248,LOC107742949,LOC107588238 coding upstream 661714 752997 ~ 774514 (+)
dlx1a dlx1a,dlx1,LOC107742982,LOC107745256,LOC107588239 coding upstream 702617 723505 ~ 733611 (+)
LOC122332318 fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404 coding downstream 646 1446645 ~ 1487634 (+)
sik1 sik1,LOC107715911,LOC107557923,LOC107559505,LOC107721609 coding downstream 85607 1531606 ~ 1541851 (+)
cfap91 maats1,LOC107551982,LOC107559508,LOC107721571 coding downstream 188178 1634177 ~ 1646598 (+)
nr1i2 nr1i2,LOC107715907,LOC107661291 coding downstream 201480 1647479 ~ 1668946 (+)
LOC122332307 NA coding downstream 340547 1786546 ~ 1789324 (+)
G173282 NA non-coding upstream 168286 1266745 ~ 1267942 (+)
G173281 NA non-coding upstream 170708 1264083 ~ 1265520 (+)
G173205 NA non-coding upstream 572927 862722 ~ 863301 (+)
G173103 NA non-coding upstream 820709 506529 ~ 615519 (+)
G173083 NA non-coding upstream 1024405 346582 ~ 411823 (+)
G173292 NA non-coding downstream 24452 1470451 ~ 1491333 (+)
G173294 NA non-coding downstream 48621 1494620 ~ 1494953 (+)
G173295 NA non-coding downstream 49101 1495100 ~ 1495413 (+)
G173410 NA non-coding downstream 96536 1542535 ~ 1552427 (+)
G173449 NA non-coding downstream 223553 1669552 ~ 1691907 (+)
G173289 itga7,LOC107684006,LOC107713866 other upstream 17318 1415699 ~ 1418910 (+)
G173286 LOC107566748,LOC107657405,LOC107745272,LOC107559530,LOC107671291 other upstream 43054 1374278 ~ 1393174 (+)
G173276 NA other upstream 174771 1199337 ~ 1261457 (+)
tlk1a tlk1a,tlk1,LOC107671313 other upstream 600899 809359 ~ 835329 (+)
G173104 NA other upstream 817167 508342 ~ 619061 (+)
si:ch211-214p13.8 NA other downstream 144385 1590384 ~ 1598734 (+)
si:ch211-214p13.7 NA other downstream 170610 1616609 ~ 1620452 (+)
G173493 NA other downstream 468799 1914798 ~ 1917331 (+)
G173505 NA other downstream 517212 1963211 ~ 1964710 (+)

Expression



Co-expression Network