nr1i2 (nr1i2,LOC107715907,LOC107661291)


Basic Information

Item Value
gene id nr1i2
gene name nr1i2,LOC107715907,LOC107661291
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1647479 ~ 1668946 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229602.1
CGATTGGCTGTGTGTCCAGGCCGTCCGCTCTTTTGACTGCTCGGGAAATGAGGAAAACGAGCGGCATTCGCGTCTGAAGCGAGAGCGCGTGCCTTCTCCGTCAAGCGTGTCCTTCTCGGGACATCCGTAACCAGGAAGTGCGTCCCTGGGCGGCCGTGTGTTATGAGCGCTTTAAAATCACGGTCGTGTAGTGATTGTCGACGGAGCTCGGTGAACTCGCTCGTGCTGGGGTATTACGTGAACGTCCCGCTGATATGACATGtgcTTACTTCAGCTCAGAATGAGTAAAGAAATGGAGGAGTTTTCTCCCCTGGGCGACTCGGGACACGGAGGCGGGTCAGAGGAAGAAACAGAGGAGGATGACGAGCCCAAAATCTGTCAAGTATGCGGCGACAAATCCACAGGCTACCACTTCAACGCCATGACCTGTGAGGGCTGCAAAGGCTTCTTCAGgCGCGCCATGAAGCGACCGGCGCAGCTCTGCTGCCCGTTCCAGAACGCCTGTGTCATCACGAAGAGCAACAGGAGACAGTGCCAGTCCTGCCGCCTCCAGAAATGCCTCTCAATCGGGATGAAGAGGGAGCtgatcatgtcaGACGAGGCCGTGGAGAAGCGGAGGATGCAGATCAGGAGGAAGAGGTTGCAGGAGGAGCCTGTGACGCTCTCCCCTCAACAGGAAACTGTTATACAGGAGCTGCTCACCGCACATCACAAGACCTTCGACATGACGTGCGCCAACTTCATTCAGTTCCGGCCTTTAGATCGAGATCAGAAATCCATTTCTGAGCACGGTCTTGAACCAAACAGCGACAGTTTGTTTCACACAACCACACGCAAACCTCCGTCTGAAGATGCAGTGCAGTGGACCATCAGCTTTCCCTCGCCCTCATCCCCTTCCTCTAGCTTTCAGAGTCCTGACAATAAAGAGAGGAAGCGACTCAAAAATTCCATTTTCACCACTCTGCCACATTTTACAGACCTCACCACGCATATGATCAAGAATATAATCAACTTCAGCAAAACGCTTACGATGTTCAGGGCTCTTATCATAGAGGACCAGATCGCGCTGCTGAAAGGAGCAACCtttgaaatcattctgattcaCTTCAACATGTTCTTTAATGAGGTGACAGGCATCTGGGAGTGCGGCCCGCTGCAGTACTGCCTGGATGACGCCATGCGAGCTGGTTTCCAGCGCCATCTACTGGACCCTATGATGAATTTCCATTACGCTCTGCGCAAGCTGCACTTACACGAAGAGGAGTATGTGCTGATGCAGGCCATCTCGCTCTTCTCACCAGGTACTCCAGAAGATCCTCAGCAAGCACATGAACGCAGGTGTTATTTTACCTCTCTTACCTCATTCACAGATCGCCCCGGAGTGACGAATCACAACATGATCGACCGCAACCAGGAGACGGTAGCCCTCACCCTGAAGAGCTACATTGAAGCCAAGCGCTCCAATGCAGATAAACATCTGCTGTACCCAAAGATCTTGGCGTGCCTGACTGAGATGAGGAGTATGAACGAAGAGTATACTAAACAAGTGCTGAAAATCCAGGACATTCAGCCTGATGTGTCTCCGCTCTTATTGGAAATAATCAGCAAAGACAGCTAAGCCTTCACAGAGCCGATGAGCCTTGAACCTCGCGCTAACCTTCATCTGAGGACGCCAAGAACTGAAATACAGCCCAGACCGGCGAGGACAAGGACTGCGCCTACTGTTAATGAGCTACTGAACTGTCTGCAGCACACAACTGTAATTGTATTTTGATAACTGTGTTTCTAAATGTATTCGTGTCCAAGCAATCTTTTCACAAAAGAACAATATGGTTTGCAACCAGATACAGGACGGCACTTATTTTCTCTTACATTTACTGCACGATGGGGTCGGATTGATCGATTTGATCCAGGTTTTCGTCAGTTTGCAGGACGTAGAGAGGAGATGCTGTAAGAGAACACTATTATGGCAGCATATACTTCTAAAACGTCAGTATGATACGTACAAGTAATTTGTGTTAATGGTCTGTCTTgacaaatctgttttatttattgttcatttttaaatgcaaaatagtcGTATAAGTTAACCGCTTCTAGGTATGTTGTTCttattatattgaaaaaaatatatatgcatacatagcGTATATCATCAGTGCCAATGTCAGACTAGAATGTAAATGAAGTTCTGAATCTCATAAAGAACATGTTCAGGTCTTaatttgcttatatatatatatatatatatatatatatatatatatatatatatatatatgttttgcataataaatgaaGCTTAATTTTTAGGTCAGTTTTTAGGAATTATCACAAATTATTTACGCTTATGCCAATTTAATTATACTAatgagaagatttttttttatgaaaggaAATTAGAAAACAGGCTTATCTTATGCGAAATATCGATTATTGTTTGTGCAATGTTAGTTTGATCgcaattatttttcattacagtaatgagaataagatcgtttttgcattttagaaatgagaaaatatcCCAATTTTTTTGTATGGTTACATTTTCGAGATAATTtttcattacagtaatgagaatctttttttttaacagtaatggAAAAACAGGCCTACTTTTATGcaaaatgtgtgcttttttttcatttttggaccTGGATACGTTCTTGTCAGATTTGGCGAGGCTGGGTGTCAAAAGAGTTGTGCTGGTCGTTTCATGTCTGCTGTGAATGATTTCTATTAGTAACAAAGCTTGCTTTATTTTGCGCAACATGAATGTCAAGAATCAGAGAGGCTGAAAGAGTTCGTTACGCAGACACTTTCTTGGGAAGTTACTGCCTTTTAAAATGCTTCACTCAGGTGTGAGCGTAACCTTTTTCACTCGGTGCATTCAGGGTTTAAAGACTTCAGGACAGCACTTAAAGGTCATTTGGATCTTTTCTGGTTGGTTTCGTCaataaagctaaaaaagttTAACTGTGACAATCAATGTGAAGAATGTAAGCCAgtgtcgtgtgtgtgtatgtgacatGGCAGCGTAGAGCAGATGTCGAGGGTTCAAGCTAGGAGTGCAGTATTTTTTAGAAAGGACACATTTGACTCAAATACAAGCAGAGTATTGTAAAACACAGACTCCTTTAAAATGCCTTCATGTTGGCAAGCTGTGTAGATATAGCAGTTATTTCTATATCCTTTCTGCGACATGATGAGGATTTCTACACAATACACTCAGGTTTTCTGTCTCACTCAGTGGTTGTTTTCAAAGTAACATTTATATGACCCTCTCaggaaaataaaatctaaaattgaa
>XM_043229603.1
GATTGGCTGTGTGTCCAGGCCGTCCGCTCTTTTGACTGCTCGGGAAATGAGGAAAACGAGCGGCATTCGCGTCTGAAGCGAGAGCGCGTGCCTTCTCCGTCAAGCGTGTCCTTCTCGGGACATCCGTAACCAGGAAGTGCGTCCCTGGGCGGCCGTGTGTTATGAGCGCTTTAAAATCACGGTCGTGTAGTGATTGTCGACGGAGCTCGGTGAACTCGCTCGTGCTGGGGTATTACGTGAACGTCCCGCTGATATGACATGtgcTTACTTCAGCTCAGAATGAGTAAAGAAATGGAGGAGTTTTCTCCCCTGGGCGACTCGGGACACGGAGGCGGGTCAGAGGAAGAAACAGAGGAGGATGACGAGCCCAAAATCTGTCAAGTATGCGGCGACAAATCCACAGGCTACCACTTCAACGCCATGACCTGTGAGGGCTGCAAAGGCTTCTTCAGgCGCGCCATGAAGCGACCGGCGCAGCTCTGCTGCCCGTTCCAGAACGCCTGTGTCATCACGAAGAGCAACAGGAGACAGTGCCAGTCCTGCCGCCTCCAGAAATGCCTCTCAATCGGGATGAAGAGGGAGCtgatcatgtcaGACGAGGCCGTGGAGAAGCGGAGGATGCAGATCAGGAGGAAGAGGTTGCAGGAGGAGCCTGTGACGCTCTCCCCTCAACAGGAAACTGTTATACAGGAGCTGCTCACCGCACATCACAAGACCTTCGACATGACGTGCGCCAACTTCATTCAGTTCCGGCCTTTAGATCGAGATCAGAAATCCATTTCTGAGCACGGTCTTGAACCAAACAGCGACAGTTTGTTTCACACAACCACACGCAAACCTCCGTCTGAAGATGCAGTGCAGTGGACCATCAGCTTTCCCTCGCCCTCATCCCCTTCCTCTAGCTTTCAGAGTCCTGACAATAAAGAGAGGAAGCGACTCAAAAATTCCATTTTCACCACTCTGCCACATTTTACAGACCTCACCACGCATATGATCAAGAATATAATCAACTTCAGCAAAACGCTTACGATGTTCAGGGCTCTTATCATAGAGGACCAGATCGCGCTGCTGAAAGGAGCAACCtttgaaatcattctgattcaCTTCAACATGTTCTTTAATGAGGTGACAGGCATCTGGGAGTGCGGCCCGCTGCAGTACTGCCTGGATGACGCCATGCGAGCTGGTTTCCAGCGCCATCTACTGGACCCTATGATGAATTTCCATTACGCTCTGCGCAAGCTGCACTTACACGAAGAGGAGTATGTGCTGATGCAGGCCATCTCGCTCTTCTCACCAGATCGCCCCGGAGTGACGAATCACAACATGATCGACCGCAACCAGGAGACGGTAGCCCTCACCCTGAAGAGCTACATTGAAGCCAAGCGCTCCAATGCAGATAAACATCTGCTGTACCCAAAGATCTTGGCGTGCCTGACTGAGATGAGGAGTATGAACGAAGAGTATACTAAACAAGTGCTGAAAATCCAGGACATTCAGCCTGATGTGTCTCCGCTCTTATTGGAAATAATCAGCAAAGACAGCTAAGCCTTCACAGAGCCGATGAGCCTTGAACCTCGCGCTAACCTTCATCTGAGGACGCCAAGAACTGAAATACAGCCCAGACCGGCGAGGACAAGGACTGCGCCTACTGTTAATGAGCTACTGAACTGTCTGCAGCACACAACTGTAATTGTATTTTGATAACTGTGTTTCTAAATGTATTCGTGTCCAAGCAATCTTTTCACAAAAGAACAATATGGTTTGCAACCAGATACAGGACGGCACTTATTTTCTCTTACATTTACTGCACGATGGGGTCGGATTGATCGATTTGATCCAGGTTTTCGTCAGTTTGCAGGACGTAGAGAGGAGATGCTGTAAGAGAACACTATTATGGCAGCATATACTTCTAAAACGTCAGTATGATACGTACAAGTAATTTGTGTTAATGGTCTGTCTTgacaaatctgttttatttattgttcatttttaaatgcaaaatagtcGTATAAGTTAACCGCTTCTAGGTATGTTGTTCttattatattgaaaaaaatatatatgcatacatagcGTATATCATCAGTGCCAATGTCAGACTAGAATGTAAATGAAGTTCTGAATCTCATAAAGAACATGTTCAGGTCTTaatttgcttatatatatatatatatatatatatatatatatatatatatatatatatatgttttgcataataaatgaaGCTTAATTTTTAGGTCAGTTTTTAGGAATTATCACAAATTATTTACGCTTATGCCAATTTAATTATACTAatgagaagatttttttttatgaaaggaAATTAGAAAACAGGCTTATCTTATGCGAAATATCGATTATTGTTTGTGCAATGTTAGTTTGATCgcaattatttttcattacagtaatgagaataagatcgtttttgcattttagaaatgagaaaatatcCCAATTTTTTTGTATGGTTACATTTTCGAGATAATTtttcattacagtaatgagaatctttttttttaacagtaatggAAAAACAGGCCTACTTTTATGcaaaatgtgtgcttttttttcatttttggaccTGGATACGTTCTTGTCAGATTTGGCGAGGCTGGGTGTCAAAAGAGTTGTGCTGGTCGTTTCATGTCTGCTGTGAATGATTTCTATTAGTAACAAAGCTTGCTTTATTTTGCGCAACATGAATGTCAAGAATCAGAGAGGCTGAAAGAGTTCGTTACGCAGACACTTTCTTGGGAAGTTACTGCCTTTTAAAATGCTTCACTCAGGTGTGAGCGTAACCTTTTTCACTCGGTGCATTCAGGGTTTAAAGACTTCAGGACAGCACTTAAAGGTCATTTGGATCTTTTCTGGTTGGTTTCGTCaataaagctaaaaaagttTAACTGTGACAATCAATGTGAAGAATGTAAGCCAgtgtcgtgtgtgtgtatgtgacatGGCAGCGTAGAGCAGATGTCGAGGGTTCAAGCTAGGAGTGCAGTATTTTTTAGAAAGGACACATTTGACTCAAATACAAGCAGAGTATTGTAAAACACAGACTCCTTTAAAATGCCTTCATGTTGGCAAGCTGTGTAGATATAGCAGTTATTTCTATATCCTTTCTGCGACATGATGAGGATTTCTACACAATACACTCAGGTTTTCTGTCTCACTCAGTGGTTGTTTTCAAAGTAACATTTATATGACCCTCTCaggaaaataaaatctaaaattgaa

Function

symbol description
nr1i2 Enables nuclear receptor activity and steroid hormone receptor activity. Acts upstream of or within regulation of transcription, DNA-templated; response to toxic substance; and transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; heart; liver; and pleuroperitoneal region. Orthologous to human NR1I2 (nuclear receptor subfamily 1 group I member 2).

NR:

description
nuclear receptor subfamily 1 group I member 2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08540 NR1I2, PXR; pregnane X receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229602.1 True 3313 mRNA 0.43 8 1647479 1668946
XM_043229603.1 False 3243 mRNA 0.43 9 1647480 1668946

Neighbor

gene id symbol gene type direction distance location
cfap91 maats1,LOC107551982,LOC107559508,LOC107721571 coding upstream 881 1634177 ~ 1646598 (+)
sik1 sik1,LOC107715911,LOC107557923,LOC107559505,LOC107721609 coding upstream 105628 1531606 ~ 1541851 (+)
LOC122332318 fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404 coding upstream 159845 1446645 ~ 1487634 (+)
LOC122332266 LOC107737514,LOC107673110,LOC107591117,LOC107593905,LOC107716156,LOC107668346 coding upstream 201480 1436228 ~ 1445999 (+)
fmnl2a fmnl2a,LOC107745270,LOC107559537,LOC107657404 coding upstream 387314 1206192 ~ 1260165 (+)
LOC122332307 NA coding downstream 117600 1786546 ~ 1789324 (+)
LOC122332310 NA coding downstream 124924 1793870 ~ 1816106 (+)
si:ch211-141e20.2 NA coding downstream 150930 1819876 ~ 1829982 (+)
fgf9 LOC107688669,LOC107572408 coding downstream 175863 1844809 ~ 1847284 (+)
tmprss3a tmprss3,LOC107748899,LOC107713697 coding downstream 180624 1849570 ~ 1861337 (+)
G173410 NA non-coding upstream 95052 1542535 ~ 1552427 (+)
G173295 NA non-coding upstream 152066 1495100 ~ 1495413 (+)
G173294 NA non-coding upstream 152526 1494620 ~ 1494953 (+)
G173292 NA non-coding upstream 156146 1470451 ~ 1491333 (+)
G173282 NA non-coding upstream 379537 1266745 ~ 1267942 (+)
G173449 NA non-coding downstream 606 1669552 ~ 1691907 (+)
G173465 NA non-coding downstream 64577 1733523 ~ 1734755 (+)
G173454 lrrc58b,lrrc58,LOC107721825,LOC107559501,LOC102790154,LOC107715899,LOC107688662,LOC107551992 non-coding downstream 70422 1739368 ~ 1747805 (+)
G173468 NA non-coding downstream 107355 1776301 ~ 1776839 (+)
G173477 NA non-coding downstream 166884 1835830 ~ 1838337 (+)
si:ch211-214p13.7 NA other upstream 27027 1616609 ~ 1620452 (+)
si:ch211-214p13.8 NA other upstream 48745 1590384 ~ 1598734 (+)
G173275 fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346 other upstream 201484 1206216 ~ 1445995 (+)
G173493 NA other downstream 245852 1914798 ~ 1917331 (+)
G173505 NA other downstream 294265 1963211 ~ 1964710 (+)

Expression


Co-expression Network