wdr4 (LOC107748892,LOC107661303,LOC107551989,LOC107713721)


Basic Information

Item Value
gene id wdr4
gene name LOC107748892,LOC107661303,LOC107551989,LOC107713721
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1886856 ~ 1890960 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229609.1
TAGTAGCGAAAGGATGAACAACAGTTGTTTTTGGGGACAGTCTTTATGGCGGTCTCGTGGAGACGGATCCCCGCACGTTTGCGCTCGTGACGCGATAAGCGCGCGACTGTCAGCTCGCACGTGAGCAGCAATCATCATGGCTGTGGTGTGTTCAAAGGCGGACTGGTTTGTTTCGAGCTGTGCTGCTACTTTAGTTGCTGTAAACCTTAAAGAGTCTAGAGAGCCGTTTGTGTTCGACTGTGCCAAAGCTGAGAAGAAACCGAAGGAAGCCGATGGTGATAAAACAAGtgctGGGGACGGATCAGAGGAGAAGGACAGTGGCAGTGACCGGATTCTTGCGTTTGCCGTCTCAGCGTCTGGGAAGCATGCAGCGCTCACCGATGACCACAAACGTCTTGTCCTCTTCCGTACCGAGCCGTCGTGGCAGTGCATCAGTACACGGTGGGTTGTGAGGAGATGCACGTCTCTTGTTTTCACTCAGGCTGAGGATGAAGTCTTTGCGGCTGATAAGTCTGGAGACGTGTATTCGTTCTCTGTTCTGGAGCCAGAAGAACCGGGAGAGCTGAAGCTGGGACATCTCTCCATGCTGTTAGATGTGACTCTTTCTCCTGATGATAAATACATCATTACAGCCGACCGAGATGAGAAGATCAGAGTGAGTTTCCGGCGGTCACCCTACAACATTCAGGCTTTCTGTCTAGAGCACAGAGAGTTTGTCAGTGCATTGCTCGTGCCCGTGGGGCGTCCTGACTGGCTTCTCTCTGGTTCGGGGGATGGCACGATGAAGGTCTGGCATTATGAGAGTGGCCGGCGGTTACACAGTGTTGACCTGAGGCAGTTTACCCTCCACTCTGAAGACACGGACGCAGAAAAGAGGTTTGCTGTCAGCAGGATCCTCAGCTCGCCGGATGGAAAACACATAGCTGTCCAGTGTGAGAGATTCCCCTCAGTTCAGCTGTTCGAGGTGGATTCTGGGCCCGAGGGCTGTCTGAGCCCCTCCGAGGCTCTCGTTCTTCCTCATGCTCCCTGGGACATGACCTTTGATTCACAGAGTCAGCTGTGGGTCTTACTGGAGACTGAAGACGTGAACGTGCTCCTGTACAGGTACTCGGAGCAGCACTGGCAGCCGCGTGACTCGGAGACTCCTGAACTGAGGAGGGTCTCCGAAGCATTGCGAGCTCGGTGGGATATCTTTAAAGGATCCGTGGGACTGGAGAGTCCATTCAAACACTTGTATAAAGTGAACTTCGACAACATGGCGTCGTACTTGCAGAAGAAACAGGAAAGACTAGATCAAGAGAGTAAGAAGAGAGCAGCAGCGAACGGCTCGAAGTCCAGCAAGAGAAGCAGAAGCGAGAGCGGCGCTGTGCCTCAGAGCACCAGCTGAGAGatgcttttttgtcttttttctcttttgttaatCGACAATAATTAtgactatttttattacttcagTAAAGCTCCACTTGGTTTATTTTGTGAACAGCAAGGCGCTGTAGCTTGGTTTGGCCACTAGAGGCCGCTACAGGAACACATCCTGGTACGATGTCATTAGACGACGGGAATgaacatgttttattacatCAGTGCTTAAAACATGAGATCTGTGGCTTCAGTTGTTCTTAAAgttagacttttatttttctgagtAAAAGTGACTAAAAATCTGTACATCCTGTATAATGTTTATACTTttacaaaaccaaataaaaacaacaccaaTGGTTCATA

Function

NR:

description
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0005634 nucleus cellular_component
GO:0008176 tRNA (guanine-N7-)-methyltransferase activity molecular_function

KEGG:

id description
K15443 TRM82, WDR4; tRNA (guanine-N(7)-)-methyltransferase subunit TRM82

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229609.1 True 1731 mRNA 0.50 11 1886856 1890960

Neighbor

gene id symbol gene type direction distance location
tmprss3a tmprss3,LOC107748899,LOC107713697 coding upstream 25519 1849570 ~ 1861337 (+)
fgf9 LOC107688669,LOC107572408 coding upstream 39572 1844809 ~ 1847284 (+)
si:ch211-141e20.2 NA coding upstream 56874 1819876 ~ 1829982 (+)
LOC122332310 NA coding upstream 70750 1793870 ~ 1816106 (+)
LOC122332307 NA coding upstream 97532 1786546 ~ 1789324 (+)
zgc:152951 LOC107661305,LOC107748888,LOC107551988,LOC107713722 coding downstream 33687 1924647 ~ 1933749 (+)
LOC122332269 sik1,LOC107715911,LOC107557923,LOC107721609 coding downstream 103934 1994894 ~ 1999995 (+)
G173477 NA non-coding upstream 48519 1835830 ~ 1838337 (+)
G173468 NA non-coding upstream 110017 1776301 ~ 1776839 (+)
G173454 lrrc58b,lrrc58,LOC107721825,LOC107559501,LOC102790154,LOC107715899,LOC107688662,LOC107551992 non-coding upstream 139051 1739368 ~ 1747805 (+)
G173465 NA non-coding upstream 152101 1733523 ~ 1734755 (+)
G173449 NA non-coding upstream 194949 1669552 ~ 1691907 (+)
si:ch211-214p13.7 NA other upstream 266404 1616609 ~ 1620452 (+)
si:ch211-214p13.8 NA other upstream 288122 1590384 ~ 1598734 (+)
G173275 fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346 other upstream 440861 1206216 ~ 1445995 (+)
G173493 NA other downstream 23838 1914798 ~ 1917331 (+)
G173505 NA other downstream 72251 1963211 ~ 1964710 (+)

Expression


Co-expression Network