LOC122332318 (fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404)


Basic Information

Item Value
gene id LOC122332318
gene name fmnl2,fmnl2a,LOC107688848,LOC107705607,LOC107566322,LOC107660092,LOC107745270,LOC107559537,LOC107657404
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047688.1
NCBI id JAEQBD010000033.1
chromosome length 2000000
location 1446645 ~ 1487634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229645.1
TCGCACGTATTGGATGTATACTGGATTTATAAAAGGCGCCGGGAGGCAAAGAGTGAATTAGACGCAGAGCATCTAAATCCTGCATCTGGACGACattataaaagttaaattatGGGGAATATTGAGAGCGTGGACGGCCAATCTGAGATGAAGCATCacatcatgcccttgaaagttcCCATGCCTGACCCAACAGAGCTAGAGGAAAGATTTGCCATTGTATTGAACTCAATGAACTTGCCTCCAGACAAAGCAAGATTACTTCGGCAGTACGACAACGAGAAAAAATGGGAACTCATTTGCGACCAGGAACGATTCCAAGTGAAGAATCCTCCTCACACATACATCCACAAGCTACAGAGTTATCTTGACCCAGCTGTTACCAGGAAGAAGTTCAGGAGGAGAGTGCAGGAGTCCACACAGGTCCTGCGGGAGCTGGAAATCTCATTACGGACCAATCACATCGGgTGGGTGCGGGAGTTTTTGAATGAGGAGAACAAGGGTTTGGATGTGTTGGTGGAGTATCTTTCGTTTGCACAGTATGCTGTCACGTATGACGGTGACAGTTCTGAGAACAGCACAGAAAACTCTATGGATAAATCCAAACCCTGGAACCGATCGATTGAAGACCTCCACGGAGGAAACCACCTCTCATCAGCTGTCACAGGCAACAGCATCTCCAGAGCCAGCAGACATTCAACCATAAGGTCTAACACGTTACCCAGCCGGAGGACACTGAAGAATTCCAGATTAGTATGTAAGAAAGATGACGTTCATGTGTGCATCATGTGTCTACGAGCCATCATGAACTACCAGtATGGCTTCAACATGGTCATGTCTCACCCTCATGCTGTGAATGAAATTGCACTAAGTCTGAACAATAAGAATCCCAGGACTAAAGCTCTGGTTCTGGAGCTGCTGGCCGCTGTGTGTCTGGTTCGAGGAGGTCATGAGATTATTCTCTCCGcctttgatcattttaaagagGTGTGTTCAGAAGATCAGCGCTTTGAGAAGCTCATGGAGCATTTCAAGAACGAAGATAATAACATCGACTTCATGgTGGCGTGCATGCAGTTCATAAACATTGTGGTTCATTCTGTGGAAGACATGAATTTCAGAGTGCACTTACAGTACGACTTCACAAAGCTGGGTCTGGACGAATATCTGGACAAACTGAAGCACACCGAGAGTGATAAGCTGCATGTGCAGATTCAGGCATACCTGGATAACGTGTTCGATGTGGGAGCTCTGTTAGAGGACGCAGAGACCAAGAACGCAGCGCTGGAGAGAGTGGAGGAGCTGGAAGAGAACATGTCTCACCTGACAGAGAAGTTGCAGGACACAGAGAATGAGGCGATGGCAAAAATCGTTGAGCTGGAGAAACAActgatgcacaaaaataaagagcTGGAGTCTGTTCGGGAGGTGTATAAAGACGCCAGCTCTCAGGTGCACACCCTGCGGAGGATGGTGAAGGAGAAGGACGAGGCCATTCAAAAACAGAGCAACCTGGAGAAGAAGATCCACGAGCTGGAGAAACAGGGAACCATCAAGATCCAGAAGAAAGCGGACGGGGACATTGCCATCCTGACGCACCCTCCGCAAGGGAACGGGCATCCGCCGGGGTCCCAGGGAGGTGCTGGGTTGTCCGGTGAGGGCACGGTCGGTCACGGAGGGGTGTCTAACGGGGCGGTGCATGGCCTGACCATGCCTgatcctccacctcctcctatGCCAGAGACACTACCAAACGGTCCATCTGCTGCTCCAGCgccagctcctcctcctcctcctcctcctcctcctcctcctcCACCTCCTCCTCCCCCACCTCCACCTCCTGGGCACTCGATTGAGATCTCTGCTCCTTtacctccacctcctcctccttgTGCTCCTCCTCTCCCTGGAAGCGGCACACCAACGGTCATATTCAACTCTGGCTTGACAGCCgtgaaaattaaaaagccaATCAAAACCAAGTTCCGCATGCCAGTGTTCAATTGGGTGGCTCTGAAACCAAATCAGATCAACGGCACTGTCTTCAATGAAATCGATGACGAGAGGATCCTTGAGGATTTAAATGTGGATGAGTTTGAAGAGATGTTCAAGACCAAAGCCCAGGGTCCTGCCGTCGACATGACGTTGCAAAAGCAGAAGGCTCCACAGAAAGGTCCCAATAAAGTATCGTTACTGGAGGCCAACAGGGCCAAAAACCTTGCCATCACGCTCCGCAAGGCAGGGAAGAGCCCTGAAGAGATCTGCAAAGCAATCCAGACGTTCGACCTACGTACAGTGCCTGTGGATTTCGTGGAGTGTTTGATGCGGTTCATGCCCACTGAAAGTGAGGTGAAGATGCTCCGTCAGTATGAGCGGGAGCGACGGCCAATGGACGGGCTCACTGATGAAGACCGGTTCATGATGCTCTTCAGTAAGATTGAAAGGCTGCCACAGCGGATGACCATCATGGCCTTTATGGGCAACTTTACGGATAGCCTGCAGATGCTCACACCGCAACTGCATGCTATCATAGCAGCATCTGTATCCATAAAATCATCACAGAAATTAAAGAAAATCCTTGAGATCATTTTGGCCCTTGGGAACTACATGAACAGTAGTAAAAGAGGAGCTGTTTATGGCTTCAAACTTCAGAGCTTGGATTTGCTGTTGGAGACCAAATCCACAGACAGGAAGCAGACACTTTTGCACTACATAGCCAATGTGGTGAAGGAGAAATATCCTGTTGTATGCGTTTTTTACAATGAACTGCACTACATTGAGAAAGCTGCTGCAGTCTCACTGGAGAATGTTCTCCTGGACGTGAAGGAGCTACAGAGGGGTATGGATCTGACCAGAAGAGAGTACAGCATGCACGGCCACAACTCCTTGCTCAAAGACTTCATCCATCACAACGAGGCCAGACTGAAGAAGCTCCTGGATGATGCTAGGATTGCACAGGATGCCTTCGATGATGTTGTGAAATTCTTCGGGGAGAGCCCCAAGACCATGCCACCCTCTGTGTTCTTCCCTGTTTTTGTTCGCTTCATCAAGTCCTATAGGCATGCGGATGAAGAAAACGAGCAGAGGAAGAGGCAAGAGCAGCTGATGATGGAGAAACTTCTGGAACAGGAGGCCATGATGGAGGAGCACGAGAATCAACAGTCACCTCACAAGGGCAAGCGGCAGCAGCAGGAGCTGATTGCTGAGTTAAGGAAGAGACAAGGCAAAGATAGCCGGCTTGTCTACGAAGGCAAAGATGGAGCAATTGAGGACATCATTACAGTGCTGAAGACCGTCCCCTTTACCGCACGATCAGCCAAACGTGGCTCGCGGTTCTTCTGTGACCCCGCCCTCTCCGAGGACTTCCATTACTAAACTAAATTCTGTCCCCTCAGAAAGACCTGCGCAGTCAACCCTTCCGCCGGGCCGATGCCCTGAGGAGGAGCGGGAGAAGGAACCTGGAGGTACAGCACCTTCAGCTACGCAGCATGGAGATCACCACCTGCTAGCCACGCTCGATCAACTTTTAAGGACAGAAGGTGGGCCAGTAACACTACTGAAATAAGGAACAAAAAATAGCACACTTAGAACGATGGATAAATGTGACATTGAACACTTGGGATCTGGCATCCCGATTTAGTGGAGCGGTTCGAAGAAAGCAGGACGAAGAAAACGCCAAGTGTAGAGTGTTGGATGCAATATGTCTGGCCTGCAGTCAAACGTGGATTCTACAAATGGACATTAGGAAGAAAGATCGTGGTTGTTTATGTTTAACTCTATTCAGTTTTGTGACTTTGTGTATTATGTacaagacagagcagaaatgcCAAAGGAAGTCCTCGGATTGGCCcacaattcattttcattgtcatTTAACCTCCGGTTCTAAAACTGAGCAGCCTTTTCTGAGGGGAAGATTTTACAAGatgcacttttaatttttttttctttctatcgtTTATCATCTTAAAACTtaaccttcatttaaaaaaaaaaaaaaaaagagcgcgagagagagatTCGATCTTAAGGATCTTGAGAATGACTCGTTCCGGACcgaaaaataacatgaaatgttGACAAAATGTTTACTACCAAGCATTCACGACCAATGTGACACTGTATGTACAATACATCTCATTTTAATCACAGACTTGCTCTCCTACTGGTTTTATCTCATGTGACGTTTGTGAGCTGTGGAAAAAGAGTTTgccgtttttttaaaaacaaagacatttcattggacgaaaaaaaaaaagtcttttttttaaatgtacagataTTTTGCTACAAAATTGAGCCtcttattttttacattgttcATCCATTGTGGTGCTGTACATATTGTTGAAACAAACCGACTTGTCCTGCAATATCACTGGAATGTTATTAACTTTTATGTTGTTTAGTATGACAGTATTATTTAATCTGATGGTGAAGACAGTGAATCAACTTACTCTGTGACCTAAATTGCTCTCTCATCACTATTGTTGCATATGGTAAATGTCTGTGGTTGCACGTAACACTTGAAAGCTTGAACAGACACTAGTGGCACATATAACTTTTTTCTACTTTGATCTCTTTAACTGGAATCAGTGGTTGTGTGCAAATAAAGCAATGACACCAGCaccattaaaaaatgttttgcgtGGTGGA
>XM_043229646.1
TCGCACGTATTGGATGTATACTGGATTTATAAAAGGCGCCGGGAGGCAAAGAGTGAATTAGACGCAGAGCATCTAAATCCTGCATCTGGACGACattataaaagttaaattatGGGGAATATTGAGAGCGTGGACGGCCAATCTGAGATGAAGCATCacatcatgcccttgaaagttcCCATGCCTGACCCAACAGAGCTAGAGGAAAGATTTGCCATTGTATTGAACTCAATGAACTTGCCTCCAGACAAAGCAAGATTACTTCGGCAGTACGACAACGAGAAAAAATGGGAACTCATTTGCGACCAGGAACGATTCCAAGTGAAGAATCCTCCTCACACATACATCCACAAGCTACAGAGTTATCTTGACCCAGCTGTTACCAGGAAGAAGTTCAGGAGGAGAGTGCAGGAGTCCACACAGGTCCTGCGGGAGCTGGAAATCTCATTACGGACCAATCACATCGGgTGGGTGCGGGAGTTTTTGAATGAGGAGAACAAGGGTTTGGATGTGTTGGTGGAGTATCTTTCGTTTGCACAGTATGCTGTCACGTATGACGGTGACAGTTCTGAGAACAGCACAGAAAACTCTATGGATAAATCCAAACCCTGGAACCGATCGATTGAAGACCTCCACGGAGGAAACCACCTCTCATCAGCTGTCACAGGCAACAGCATCTCCAGAGCCAGCAGACATTCAACCATAAGGTCTAACACGTTACCCAGCCGGAGGACACTGAAGAATTCCAGATTAGTATGTAAGAAAGATGACGTTCATGTGTGCATCATGTGTCTACGAGCCATCATGAACTACCAGtATGGCTTCAACATGGTCATGTCTCACCCTCATGCTGTGAATGAAATTGCACTAAGTCTGAACAATAAGAATCCCAGGACTAAAGCTCTGGTTCTGGAGCTGCTGGCCGCTGTGTGTCTGGTTCGAGGAGGTCATGAGATTATTCTCTCCGcctttgatcattttaaagagGTGTGTTCAGAAGATCAGCGCTTTGAGAAGCTCATGGAGCATTTCAAGAACGAAGATAATAACATCGACTTCATGgTGGCGTGCATGCAGTTCATAAACATTGTGGTTCATTCTGTGGAAGACATGAATTTCAGAGTGCACTTACAGTACGACTTCACAAAGCTGGGTCTGGACGAATATCTGGACAAACTGAAGCACACCGAGAGTGATAAGCTGCATGTGCAGATTCAGGCATACCTGGATAACGTGTTCGATGTGGGAGCTCTGTTAGAGGACGCAGAGACCAAGAACGCAGCGCTGGAGAGAGTGGAGGAGCTGGAAGAGAACATGTCTCACCTGACAGAGAAGTTGCAGGACACAGAGAATGAGGCGATGGCAAAAATCGTTGAGCTGGAGAAACAActgatgcacaaaaataaagagcTGGAGTCTGTTCGGGAGGTGTATAAAGACGCCAGCTCTCAGGTGCACACCCTGCGGAGGATGGTGAAGGAGAAGGACGAGGCCATTCAAAAACAGAGCAACCTGGAGAAGAAGATCCACGAGCTGGAGAAACAGGGAACCATCAAGATCCAGAAGAAAGCGGACGGGGACATTGCCATCCTGACGCACCCTCCGCAAGGGAACGGGCATCCGCCGGGGTCCCAGGGAGGTGCTGGGTTGTCCGGTGAGGGCACGGTCGGTCACGGAGGGGTGTCTAACGGGGCGGTGCATGGCCTGACCATGCCTgatcctccacctcctcctatGCCAGAGACACTACCAAACGGTCCATCTGCTGCTCCAGCgccagctcctcctcctcctcctcctcctcctcctcctcctcCACCTCCTCCTCCCCCACCTCCACCTCCTGGGCACTCGATTGAGATCTCTGCTCCTTtacctccacctcctcctccttgTGCTCCTCCTCTCCCTGGAAGCGGCACACCAACGGTCATATTCAACTCTGGCTTGACAGCCgtgaaaattaaaaagccaATCAAAACCAAGTTCCGCATGCCAGTGTTCAATTGGGTGGCTCTGAAACCAAATCAGATCAACGGCACTGTCTTCAATGAAATCGATGACGAGAGGATCCTTGAGGATTTAAATGTGGATGAGTTTGAAGAGATGTTCAAGACCAAAGCCCAGGGTCCTGCCGTCGACATGACGTTGCAAAAGCAGAAGGCTCCACAGAAAGGTCCCAATAAAGTATCGTTACTGGAGGCCAACAGGGCCAAAAACCTTGCCATCACGCTCCGCAAGGCAGGGAAGAGCCCTGAAGAGATCTGCAAAGCAATCCAGACGTTCGACCTACGTACAGTGCCTGTGGATTTCGTGGAGTGTTTGATGCGGTTCATGCCCACTGAAAGTGAGGTGAAGATGCTCCGTCAGTATGAGCGGGAGCGACGGCCAATGGACGGGCTCACTGATGAAGACCGGTTCATGATGCTCTTCAGTAAGATTGAAAGGCTGCCACAGCGGATGACCATCATGGCCTTTATGGGCAACTTTACGGATAGCCTGCAGATGCTCACACCGCAACTGCATGCTATCATAGCAGCATCTGTATCCATAAAATCATCACAGAAATTAAAGAAAATCCTTGAGATCATTTTGGCCCTTGGGAACTACATGAACAGTAGTAAAAGAGGAGCTGTTTATGGCTTCAAACTTCAGAGCTTGGATTTGCTGTTGGAGACCAAATCCACAGACAGGAAGCAGACACTTTTGCACTACATAGCCAATGTGGTGAAGGAGAAATATCCTGTTGTATGCGTTTTTTACAATGAACTGCACTACATTGAGAAAGCTGCTGCAGTCTCACTGGAGAATGTTCTCCTGGACGTGAAGGAGCTACAGAGGGGTATGGATCTGACCAGAAGAGAGTACAGCATGCACGGCCACAACTCCTTGCTCAAAGACTTCATCCATCACAACGAGGCCAGACTGAAGAAGCTCCTGGATGATGCTAGGATTGCACAGGATGCCTTCGATGATGTTGTGAAATTCTTCGGGGAGAGCCCCAAGACCATGCCACCCTCTGTGTTCTTCCCTGTTTTTGTTCGCTTCATCAAGTCCTATAGGCATGCGGATGAAGAAAACGAGCAGAGGAAGAGGCAAGAGCAGCTGATGATGGAGAAACTTCTGGAACAGGAGGCCATGATGGAGGAGCACGAGAATCAACAGTCACCTCACAAGGGCAAGCGGCAGCAGCAGGAGCTGATTGCTGAGTTAAGGAAGAGACAAGGCAAAGATAGCCGGCTTGTCTACGAAGGCAAAGATGGAGCAATTGAGGACATCATTACAGATCTGAGAAACCAGCCTTACAGGCGCGCTGACGCCGTCAGGAGGAGCATTCGAAGACGCTTTGATGATCAGAATTTGCGGCCAATGAACAATGCAGAGATGGTCATGTGACGAGGGCAGAGTGGATGTGATTGGATGGGCTGGAGGAACGGAGGAGGAGCTAATGAAggactgatgatgatgatgacggcAGGTCTGAAAGCCAAGTGCCTACGTTTAACATCTGCCCCATCAGGTGTTGAAATATACATGTGTTCTAGTCTTCTGTCTGTGAATTTTTATATGACAAacgatgtcttttttttaacggTGCTTCAATTGTACGGCGAGATCAGCGTT

Function

symbol description
fmnl2a Predicted to enable actin filament binding activity. Predicted to be involved in cell migration; cortical actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol. Is expressed in several structures, including blood vessel; nervous system; neuroectoderm; optic cup; and polster. Orthologous to human FMNL2 (formin like 2).
fmnl2 Enables cadherin binding activity. Involved in cortical actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol.

NR:

description
PREDICTED: formin-like protein 2 isoform X2

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K23957 FMNL; formic-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229645.1 True 4659 mRNA 0.47 28 1446645 1486184
XM_043229646.1 False 3624 mRNA 0.49 27 1446645 1487634

Neighbor

gene id symbol gene type direction distance location
LOC122332266 LOC107737514,LOC107673110,LOC107591117,LOC107593905,LOC107716156,LOC107668346 coding upstream 646 1436228 ~ 1445999 (+)
fmnl2a fmnl2a,LOC107745270,LOC107559537,LOC107657404 coding upstream 186480 1206192 ~ 1260165 (+)
mylka mylka,mylk,LOC107734487,LOC107745269 coding upstream 241963 1152268 ~ 1204682 (+)
mettl8 NA coding upstream 638560 801991 ~ 808085 (+)
itga6a itga6a,itga6,LOC107671295,LOC107657398,LOC107745248,LOC107742949,LOC107588238 coding upstream 672131 752997 ~ 774514 (+)
sik1 sik1,LOC107715911,LOC107557923,LOC107559505,LOC107721609 coding downstream 43972 1531606 ~ 1541851 (+)
cfap91 maats1,LOC107551982,LOC107559508,LOC107721571 coding downstream 146543 1634177 ~ 1646598 (+)
nr1i2 nr1i2,LOC107715907,LOC107661291 coding downstream 159845 1647479 ~ 1668946 (+)
LOC122332307 NA coding downstream 298912 1786546 ~ 1789324 (+)
LOC122332310 NA coding downstream 306236 1793870 ~ 1816106 (+)
G173282 NA non-coding upstream 178703 1266745 ~ 1267942 (+)
G173281 NA non-coding upstream 181125 1264083 ~ 1265520 (+)
G173205 NA non-coding upstream 583344 862722 ~ 863301 (+)
G173103 NA non-coding upstream 831126 506529 ~ 615519 (+)
G173083 NA non-coding upstream 1034822 346582 ~ 411823 (+)
G173294 NA non-coding downstream 6986 1494620 ~ 1494953 (+)
G173295 NA non-coding downstream 7466 1495100 ~ 1495413 (+)
G173410 NA non-coding downstream 54901 1542535 ~ 1552427 (+)
G173449 NA non-coding downstream 181918 1669552 ~ 1691907 (+)
G173465 NA non-coding downstream 245889 1733523 ~ 1734755 (+)
G173275 fmnl2a,LOC107745270,LOC107671284,LOC107657404,LOC107737514,LOC107591117,LOC107673110,LOC107593905,LOC107716156,LOC107668346 other upstream 650 1206216 ~ 1445995 (+)
G173289 itga7,LOC107684006,LOC107713866 other upstream 27735 1415699 ~ 1418910 (+)
G173286 LOC107566748,LOC107657405,LOC107745272,LOC107559530,LOC107671291 other upstream 53471 1374278 ~ 1393174 (+)
G173276 NA other upstream 185188 1199337 ~ 1261457 (+)
tlk1a tlk1a,tlk1,LOC107671313 other upstream 611316 809359 ~ 835329 (+)
si:ch211-214p13.8 NA other downstream 102750 1590384 ~ 1598734 (+)
si:ch211-214p13.7 NA other downstream 128975 1616609 ~ 1620452 (+)
G173493 NA other downstream 427164 1914798 ~ 1917331 (+)
G173505 NA other downstream 475577 1963211 ~ 1964710 (+)

Expression


Co-expression Network