CI01000003_00538178_00547944 (PHB2, PHB2A, PHB2B)


Basic Information

Item Value
gene id CI01000003_00538178_00547944
gene name PHB2, PHB2A, PHB2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 538085 ~ 547983 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00538178_00547944.mRNA
GTATAAAGTCGACAATCTCTCTGCAGTTTTGAGGGCAGGTTGCCCAGTACAGGAAGTGAGAGATAGAAATGTCTGGCATTTGTAAGGGCCAATATGACACACACTGAGATTCAGAAAAACATTCTACTGCAATTAATCCTGCAATTGTGCAAATGTTCTCAAAGCTCCACCAGTAGACTACAACTCCCATGGTGCCATGGCGTAAACCAGGACGTACTGCATCATGTGCTTGGTTTGTCACAAGTGACGTACAGCCGAGATCAGGACAGCATGGCGAGTAAAGATCCCGGAAATTTTTTGCAGCAGCTGAGGCAGATTGCTGGCAGGATGGGGTCTGGCCCTCGAGGGGCTGGGCTGGGCTTGAAGCTGCTTATCGGAGCTGGAGCCCTTGCCTACGGGGTCAAAGAAGCCACATACACAGTGGAGGGTGGCCAGAGAGCCATTATCTTCAACAGAATTGGAGGGATGCAGATGGATACTGTGCTTGCAGAAGGATTGCACTTCAGGATACCGTGGTTCCAGTACCCCATCATTTATGATATTCGAGCCAGGCCAAGGAAGATTTCATCCCTCACTGGAAGCAAAGATCTTCAGATGGTGAACATAGGTCTTCGTGTGCTCTCTCGGCCCAGTGCCTCCAGCTTGCCAGTCATGTACCAGCAGTTGGGGAAAGACTATGACGAGCGTGTGCTTCCTTCCATCGTCAACGAGGTGCTCAAGAGCGTGGTGGCCAAGTTCAATGCCTCTCAACTGATCACACAGAGAGCCCAGGTGTCACTACTCATAAGGAGAGATCTATTCGAGAGAGCTAAGGACTTTAACATCATCCTGGATGACGTGGCCATAACAGAGCTCAGCTTCAGCAAAGAGTACACCGCTGCTGTGGAGGCCAAACAAGTTGCCCAGCAGGAGGCCCAGAGGGCTCAGTTCTATGTAGAGAAGGCCAAACAGGACCAGAGACAGAAAATTATCCAGGCTGAGGGTGAAGCTGAGGCTGCTAAACTGTTGGGTAAAGCGGTTACGAAGAACCCTGGATACCTAAAACTTAGACGCATCAGAGCAGCCCAAAATATCGCCAAAACGGTGGCAACTTCTCAGAACAAGGTGTACCTGAGTGCAGACAGCCTTGTTTTGAACCTCCAGGACAACTACTTTGACAAGTAAGATCCTAGTGCTCCTCACATACTAAACATGCTAAACATA

Function

symbol description
phb2a Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Orthologous to human PHB2 (prohibitin 2).
phb2b Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; optic vesicle; and solid lens vesicle. Orthologous to human PHB2 (prohibitin 2).
phb2 Enables several functions, including protein C-terminus binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including defense response to virus; positive regulation of cell cycle phase transition; and regulation of transcription, DNA-templated. Located in several cellular components, including cell surface; mitochondrial membrane; and nuclear matrix. Part of mitochondrial prohibitin complex.

GO:

id name namespace
GO:0008022 protein C-terminus binding molecular_function

KEGG:

id description
K17081 PHB2; prohibitin 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00538178_00547944.mRNA True 1203 mRNA 0.50 10 538085 547983
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Neighbor

gene id symbol gene type direction distance location
CI01000003_00431473_00447759 MFN1A coding upstream 90135 431473 ~ 447950 (+)
CI01000003_00413809_00414819 NA coding upstream 122929 412590 ~ 415156 (+)
CI01000003_00390997_00406970 WDR33 coding upstream 129773 390622 ~ 408312 (+)
CI01000003_00380494_00385991 PROC, PROCA coding upstream 151994 380494 ~ 386091 (+)
CI01000003_00355244_00360638 SAGA coding upstream 177292 355244 ~ 360793 (+)
CI01000003_00568546_00573291 NA coding downstream 20563 568546 ~ 573869 (+)
CI01000003_00596144_00607951 NA coding downstream 48161 596144 ~ 608038 (+)
CI01000003_00644619_00663181 NA coding downstream 95672 643655 ~ 663280 (+)
CI01000003_00665762_00716862 DLG1, DLG1L coding downstream 116978 664961 ~ 717379 (+)
CI01000003_00731635_00742538 TFR1A coding downstream 183217 731200 ~ 742609 (+)
G22544 NA non-coding upstream 15432 522149 ~ 522653 (+)
G22524 NA non-coding upstream 69183 468673 ~ 468902 (+)
G22490 NA non-coding upstream 86984 450548 ~ 451101 (+)
G22488 NA non-coding upstream 126473 410563 ~ 411612 (+)
G22551 NA non-coding downstream 12937 560920 ~ 561612 (+)
G22585 NA non-coding downstream 34085 582068 ~ 582405 (+)
G22583 NA non-coding downstream 196698 744681 ~ 744938 (+)
G22574 NA non-coding downstream 269815 817798 ~ 819540 (+)
G22601 NA non-coding downstream 331648 879631 ~ 879868 (+)
G22420 NA other upstream 348646 179531 ~ 189439 (+)
G22578 NA other downstream 376820 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1315285 1862854 ~ 1868137 (+)
G23870 NA other downstream 1732677 2280660 ~ 2285641 (+)

Expression

CI01000003_00538178_00547944(PHB2, PHB2A, PHB2B) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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CI01000003_00538178_00547944(PHB2, PHB2A, PHB2B) Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_00538178_00547944(PHB2, PHB2A, PHB2B) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016109 phb2a coding NC_007113.7 CM002886.2 5178172 ~ 5199431 (-)