CI01000003_00568546_00573291


Basic Information

Item Value
gene id CI01000003_00568546_00573291
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 568546 ~ 573869 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00568546_00573291.mRNA
AATAAGAACCTCATGGTGAAGGAATGCACATTGATAGCTGGGTTGTTTTCTAAGGTACTGGACACTGCTTATGGCCGGCTTTCTCGCACACTGTGGGTCATTTCTTTGATTGACATCTCTGGCATCCAATCGTTTCGCGCAAAGCGTCAACTGTGGGTTCTGATCGTCTGGGCATCCAATCAGATGCGCCCGACTGCAAGAAGCCTCGTCATCAAAGTTGAATTTGAATATGAAAAGGCAGTGGTGAAAAGAGCTGTTTTTGCTCGCAGTGCTAAGTTTAGTGCGAAATTCACGGAAAGGGGAGGGGCTGCATCTGGCATGAAAACACCGTTTCCCAAATGCCACCCTATCACCGTACGTGCTTTAAAAACAACATTTCCTCAGTGTGCTTTGACTACCTGTCTATCCTATAATAGTATAGGTGCCGTGTTTGGGGGTGATTTAGGGGTCAATAAGTCTAAGCAGCTGATGGACAGACAACATTTGTTAACTACTGATTGCACGACTTCATTTGTGAGAGGTAGTATGGTCGTATCTACGAATTTGTTTACGAAATGTGGAATTGCATTGCACAGAAATGTCTGTAACGAGAAAAGCGGAGGTAGGAGAGTTCGGTATCAGCTCGCTGAAACACAATTCCGTGGTTCTGAATCATCCAGCTTGTTTCGAGTTTTAAGCTTGTGTTTTCTGGAGCTGCAATGTGATGAGGATGAGGACGAGGATGAAGATGACGACGAGCTAGGTGGAGGAACAAAACGAGCTGCTGAAGAGGACGATGAAGATGATGAGGATGACGTCGACCCCAAGAAGCAGAAGACGGATGATGATGATTAAAGGATCGTTTCATATTGCTGAGCAGGTGTAGACGCCTCTGCTTTAACCCAACTGTTGGAGCCAGTGGCATAAAGGACTCAAATACATAAAACATGGTCATTTTCAAGTTCGTCACCCATGTCAACCAACTGACCCCCAATTCAAAATTTTCTAGAGGACCGACCACAACTTCCGATTTCCAGCATTCACAATGAAATAAGCAAGACAAGGATTTGTTTGTATTTTTATTTACATTTTATATTTTTGTACATATTGTGAAGAGGTCAGCCACTTTATCGTGATCTCCTGTGACCAAAACGGTGCTTCTTTATGAAATTTTACTTGTTTGACCATGTCTCAATATTTCAACATTTAAGACAACATGTATAAAATCAACAGCCATTGAACTCAGAGCATTCCAGTAAATTTTATGTATGAACTTTAGTTGTACCATAACTAGTTGTACCATAAACTAGTTTTTGTATGGGAGGGCTAGGCCAAAGAAAAAAGGAGTTTTGGTTTCTTTTGACTTTGTTTTGTCTGCATTATTTGTTTTACCTTGGCCTGTTTGTTGTATGTGTGGAGTTTGTTGTTCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00568546_00573291.mRNA True 1412 mRNA 0.42 6 568546 573869
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000003_00538178_00547944 PHB2, PHB2A, PHB2B coding upstream 20563 538085 ~ 547983 (+)
CI01000003_00431473_00447759 MFN1A coding upstream 120596 431473 ~ 447950 (+)
CI01000003_00413809_00414819 NA coding upstream 153390 412590 ~ 415156 (+)
CI01000003_00390997_00406970 WDR33 coding upstream 160234 390622 ~ 408312 (+)
CI01000003_00380494_00385991 PROC, PROCA coding upstream 182455 380494 ~ 386091 (+)
CI01000003_00596144_00607951 NA coding downstream 22275 596144 ~ 608038 (+)
CI01000003_00644619_00663181 NA coding downstream 69786 643655 ~ 663280 (+)
CI01000003_00665762_00716862 DLG1, DLG1L coding downstream 91092 664961 ~ 717379 (+)
CI01000003_00731635_00742538 TFR1A coding downstream 157331 731200 ~ 742609 (+)
CI01000003_00747650_00802075 NA coding downstream 172678 746547 ~ 802681 (+)
G22551 NA non-coding upstream 6934 560920 ~ 561612 (+)
G22544 NA non-coding upstream 45893 522149 ~ 522653 (+)
G22524 NA non-coding upstream 99644 468673 ~ 468902 (+)
G22490 NA non-coding upstream 117445 450548 ~ 451101 (+)
G22488 NA non-coding upstream 156934 410563 ~ 411612 (+)
G22585 NA non-coding downstream 8199 582068 ~ 582405 (+)
G22583 NA non-coding downstream 170812 744681 ~ 744938 (+)
G22574 NA non-coding downstream 243929 817798 ~ 819540 (+)
G22601 NA non-coding downstream 305762 879631 ~ 879868 (+)
G22602 NA non-coding downstream 306084 879953 ~ 880262 (+)
G22420 NA other upstream 379107 179531 ~ 189439 (+)
G22578 NA other downstream 350934 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1289399 1862854 ~ 1868137 (+)
G23870 NA other downstream 1706791 2280660 ~ 2285641 (+)

Expression

CI01000003_00568546_00573291 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1250.
End of interactive chart.

CI01000003_00568546_00573291 Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_00568546_00573291 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
End of interactive chart.

Co-expression Network