CI01000003_00596144_00607951


Basic Information

Item Value
gene id CI01000003_00596144_00607951
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 596144 ~ 608038 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00596144_00607951.mRNA
ATGACAGCAAAAACAGCTGCTATAATCACTGTTCAGTATGAGAGAGCCAGACGGGATGGACATGTGTTGGAAAGCGCCTATGTCATATTGTTTACAGATCCACATTCTGTTACAGAGAATATGCCCAGTCTCAAATGCCGCGGAGCAGATTGGCGGTGGAGACTGAATCGTAGCGTCTGTGTGTCTTTTGAATGGAAGCGCAGGGCTGTCAGTGGAGTAAAGCTCAATTCTGTGTTGTCGCTCGACTGTCAGGTTAAAGAAGTGCAGCTCGCGCTCGACTCTAAAATCATTTCATATCAGCCTGAACCGTCCTCATGTTTACCGGATAAACATTTGAGTTTCATGCCAACTGCGTCTAACTTACCCCTCCTTGACACTCTGGACGAACTCGTGTTGGGAGAGGAGCGTTTTATTATCGCGTGTATTGTTAATTTTTGTCGCGAGCTCTGCTGGATTGGTTATCGTGCACGAGCCCAACCTAAACATGCCAATGCACAGAGGGCTCTGTTACTGCTGGAGGAATACCGGTCAAAACTCAGTAACACTGAAGACAGACAGCTGAGAAACTCCATCCAGAGAGTCATTGACATCTTCCAGAGTAACCTCTTCCAGGCGCTTATAGATATCCAGGAATTTTACGAAGTGACCTTATTGGATAATCAGAGATGTGGGGAATCAGTGAAAGTGCCCGATGCAATGCCCCCAGTGAACCTGTGGGATTTCTCCAGCATTCAAAGCACAACGGTGACTTCCGACACCCTGCCCAGCCTTAGCACCAGCATAGAGGTCAATTTGATGCTGTTTAAAACTTTTTATATCATTCAATTACTGCTAAGCATCTCACAAATATCTCACAGTTTAAAAAGATTGATGTTGTCAGAAAATGGCATACTGTTTATTTTTATTAAACAAGACCATAATATGGTCCTTTAATTAGACCGCATTCAGATTACAAAGCACCAACCAAACATGACATGGTTGATTGACATGTCTATTGGAAATGGATGGCAGTCTTAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00596144_00607951.mRNA True 1020 mRNA 0.44 5 596144 608038

Neighbor

gene id symbol gene type direction distance location
CI01000003_00568546_00573291 NA coding upstream 22275 568546 ~ 573869 (+)
CI01000003_00538178_00547944 PHB2, PHB2A, PHB2B coding upstream 48161 538085 ~ 547983 (+)
CI01000003_00431473_00447759 MFN1A coding upstream 148194 431473 ~ 447950 (+)
CI01000003_00413809_00414819 NA coding upstream 180988 412590 ~ 415156 (+)
CI01000003_00390997_00406970 WDR33 coding upstream 187832 390622 ~ 408312 (+)
CI01000003_00644619_00663181 NA coding downstream 35617 643655 ~ 663280 (+)
CI01000003_00665762_00716862 DLG1, DLG1L coding downstream 56923 664961 ~ 717379 (+)
CI01000003_00731635_00742538 TFR1A coding downstream 123162 731200 ~ 742609 (+)
CI01000003_00747650_00802075 NA coding downstream 138509 746547 ~ 802681 (+)
CI01000003_00842413_00868623 TNK2 coding downstream 234375 842413 ~ 868663 (+)
G22585 NA non-coding upstream 13739 582068 ~ 582405 (+)
G22551 NA non-coding upstream 34532 560920 ~ 561612 (+)
G22544 NA non-coding upstream 73491 522149 ~ 522653 (+)
G22524 NA non-coding upstream 127242 468673 ~ 468902 (+)
G22490 NA non-coding upstream 145043 450548 ~ 451101 (+)
G22583 NA non-coding downstream 136643 744681 ~ 744938 (+)
G22574 NA non-coding downstream 209760 817798 ~ 819540 (+)
G22601 NA non-coding downstream 271593 879631 ~ 879868 (+)
G22602 NA non-coding downstream 271915 879953 ~ 880262 (+)
G22603 NA non-coding downstream 272583 880621 ~ 880871 (+)
G22420 NA other upstream 406705 179531 ~ 189439 (+)
G22578 NA other downstream 316765 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1255230 1862854 ~ 1868137 (+)
G23870 NA other downstream 1672622 2280660 ~ 2285641 (+)

Expression

CI01000003_00596144_00607951 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

CI01000003_00596144_00607951 Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_00596144_00607951 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) dlg1l LOC106568684 misc NC_048572.1 CM023226.2 48356004 ~ 48616588 (-)