CI01000003_00731635_00742538 (TFR1A)


Basic Information

Item Value
gene id CI01000003_00731635_00742538
gene name TFR1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 731200 ~ 742609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00731635_00742538.mRNA
TTTTAAAAACTCAAGTCTTGTATACAGTAGCTCAGACTAAAACAGTCAGATAACAAACTGATGTATTCACTGATAATCTTCCCTGGTGAGTATTTTCACACTGACGATGTAACAGAAAAATGTGATGTCACACACACAAACACACACACAAACACACACACAAACACACACACACACACAGAGGTGTCAAGTTAAGGTCAAAGTTCAAGACTACTGTTATATCAACCAGAGAAACATAAACAAAACATTGTGTAGTGCACCTTCACCAACATTACAATATAATATCTGTTATTGCAGATCATTATACAGCCCTTTTTGTTGACATAAGGAATCTATCTTTGTTTTATGATAAATTTATCTCCTACAGAGTGATCTTAGATTTCTGTGTTCCACTAAACATTTCTCATTCTCTTGCTGCAGTTATTTGAGAACACGATGGATCAAGCCAGGACAACAATTTCAAAAATCTTCAATGGGGAGCCGCGCTCCTATACTCGCTTTAACCTGACCCAGAACATGGAGGGTGACAATAGCCATGTGGAGATGAAGCTCTCATCTGACATGGATGATGAAATGGAGGCTAACGGTGTTGGGGAAAACGTGAACCAACATAATCGTCCATATTACCCCAGCAAGCTGAACCAGCATTCTCCCAAAACAGTCTGCGGATTTGTCATTGCCATTCTGTTCCTCTTCATTATTGGATACCTCATTGGTTACCTGTCTAATAGAAGCACAGACAAAACTGAAATCAGTTCAGATTGTCCGGTTTTTAGTGAGATTGCTCCAGTGAGAGCAGAAGCAGTTTATTCATTGGACTGGAGCGATCTCAGGGCATTGCTGAAAAAGAAACTGACAACTGACAACATTAACAGCAACCTCAAGGAATTCTCTAGTGCCAGTCACCAGGCGGGAAGCTCAGGTGATGAGGCGCTTGCTAATAAAATCATGGGAAAATTCAAAACTTTTGGAATGAACCCCTGGACCGACGAGCACTATGTGAAAGTCCATGAACCTGCTGACTCAAAAAACAGAGTGCTGTTTCGTGGTAACGTTGTGGGAACAACCGAGGGATATTTGGCATACAGTGCAGTTACTACAGTGCAGGGAGCAGCTCTGTATGCCCATTATGGACGGGCAGAGGACTTCAGACGCCTAAAAGAGCTGAATGTTGATGTGAATGGAAAGGTTGTCTTGGTCAGAGCTGGACTACTAAGTTTCGCTGAAAAGGTTGCTAATGCTGCTAACTTGAATGCTAGTGCTGTGCTAATTTATCCAGATCCTGTTAATTACGAAATTAATGAAGACACTGCTCTTTTTGGCCATGTCCATCTTGGCACTGGTGATCCCTATACTCCAGGATTCCCTTCCTTTAATCATACCCAGTTTCCCCGGGCTAAGTCTTCTGGCTTGCCCAGCATTCCGGCCCAAACTATCACCATAAAGCAGGCTATTGAGATCATGAGTAAGTTGGGAGGTCGGGCTTCACCTGATGGCTGGAGTGATGGGATGCTCCGGGATACCATGTACAAGCTCGGCGATGATAGCGACAATATCACCGTGGTAGTGAGCAATTCCCTAGTTGAGAAAAAAATCCACAATGTGTTTGGAGTCATTAAAGGTTATACGGATGCAGATCGTTATATGGTGATCGGAGCCCAGCGAGATGCATGGGGCCCTGGATTTGCCAGAAGCACAGTTGGCACTAGTTTACTGGTGGAGTTGGCCAGAACTATTACAGATATGATCAAGAACGATGGATTCAAACCAAAGAGGAGCATAGTGTTTGCTAGCTGGAGTGCTGGTGAATTTGGTAGTGTTGGGGCCACAGAGTGGTTGGAGGGCTACCTGACCTCCTTGAATTTGAAAACGTTTTCTTACATCAGCCTTGATGAAGTTATTTCAGGTTTTGACTCTTTCAAAGCAACTGCCAGTCCATTGCTGTATGGGTTACTAGAGAGCACTATGAAACAGGTCTCATCTCCAGTTGATGCAACCAAATCCTTGCATGAACAGTTTGCTGGATCCAGCTGGGAGAAGTCTGTAATGGAGCCTATGGGTTTGTCTCACTCTGTTTATCCATTCCAGAGCTTTTCGGGTATCCCATCACTTTCCTTTCGATTTACTTCAAGTTCAAAGTCATACCCGTTTGGCACTTTTGAGGATACTGATCAAAATCTGGAACGGTACACTTCCTTCAACACTCTGAAACTGGCCAAGACAGCAGGCGAGGTGGCTGGGCTGGTTACTCTTCGGCTGGTACACGACCACTTGCTCAAGCTGAATGTGGAAAAGTATACCAGTGTCATCCGCAACTATGTGTCCCAGATCAGGTCTAAAGTTGAATCACGGCAAATGGGGTCGTACGATCGTGCTGCAAGCGCACTTGTTTCTGCCATCCGGAACAGTGATCTTGAAGACATGGAGCAGTGTCGCATCATCAACAATCGCATTATGAGGGTGGAAGGAAGTCTCCTCTCTCCCTACGTTTCTCCACGGGAGAGTCTGTTCCGGCACATTGTGCTGGGCTCTGGCTCGCACACACTGACAGCTCTGGTGAATCACCTTGAAGCTATTAAAGTAGGTCTTGAATCTGCTGACGTCGACCAATTCAAGAATCAGTTTGCTCTTGCTACCTGGACCATCCAGGGCTGTGCCAATGCATTGGCAGGGGAAGTATGGGATATGGATAATGAAATTTAGACAAGCAGATTCAGCTTACCTCTTTAACAATTTGATAACTTTGAACCATCACTCAAGACAAAAAAGGAAAA

Function

symbol description
tfr1a Predicted to enable transferrin receptor activity. Acts upstream of or within cellular iron ion homeostasis; hemoglobin biosynthetic process; and hemopoiesis. Predicted to be located in melanosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in blood; blood island; intermediate cell mass of mesoderm; presumptive blood; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast carcinoma; immunodeficiency 46; multiple myeloma; and ovarian cancer. Orthologous to human TFRC (transferrin receptor).

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process

KEGG:

id description
K06503 TFRC, CD71; transferrin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00731635_00742538.mRNA True 2774 mRNA 0.44 17 731200 742609
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Neighbor

gene id symbol gene type direction distance location
CI01000003_00665762_00716862 DLG1, DLG1L coding upstream 13821 664961 ~ 717379 (+)
CI01000003_00644619_00663181 NA coding upstream 67920 643655 ~ 663280 (+)
CI01000003_00596144_00607951 NA coding upstream 123162 596144 ~ 608038 (+)
CI01000003_00568546_00573291 NA coding upstream 157331 568546 ~ 573869 (+)
CI01000003_00538178_00547944 PHB2, PHB2A, PHB2B coding upstream 183217 538085 ~ 547983 (+)
CI01000003_00747650_00802075 NA coding downstream 3938 746547 ~ 802681 (+)
CI01000003_00842413_00868623 TNK2 coding downstream 99804 842413 ~ 868663 (+)
CI01000003_00981851_01059504 TMTOPSA coding downstream 239242 981851 ~ 1059504 (+)
CI01000003_01126525_01129929 ADIPOQB coding downstream 383489 1126098 ~ 1130325 (+)
CI01000003_01140472_01168860 NA coding downstream 397733 1140342 ~ 1168900 (+)
G22585 NA non-coding upstream 148795 582068 ~ 582405 (+)
G22551 NA non-coding upstream 169588 560920 ~ 561612 (+)
G22544 NA non-coding upstream 208547 522149 ~ 522653 (+)
G22524 NA non-coding upstream 262298 468673 ~ 468902 (+)
G22490 NA non-coding upstream 280099 450548 ~ 451101 (+)
G22583 NA non-coding downstream 2072 744681 ~ 744938 (+)
G22574 NA non-coding downstream 75189 817798 ~ 819540 (+)
G22601 NA non-coding downstream 137022 879631 ~ 879868 (+)
G22602 NA non-coding downstream 137344 879953 ~ 880262 (+)
G22603 NA non-coding downstream 138012 880621 ~ 880871 (+)
CI01000003_00390997_00406970 WDR33 other upstream 335986 390622 ~ 408312 (+)
G22420 NA other upstream 541761 179531 ~ 189439 (+)
G22578 NA other downstream 182194 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1120659 1862854 ~ 1868137 (+)
G23870 NA other downstream 1538051 2280660 ~ 2285641 (+)

Expression

CI01000003_00731635_00742538(TFR1A) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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CI01000003_00731635_00742538(TFR1A) Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_00731635_00742538(TFR1A) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016106 tfr1a coding NC_007113.7 CM002886.2 4849269 ~ 4874966 (-)