CI01000003_00842413_00868623 (TNK2)


Basic Information

Item Value
gene id CI01000003_00842413_00868623
gene name TNK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 842413 ~ 868663 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00842413_00868623.mRNA
AAGCTGGGCAGCAGTATGCAGTGTGAGGAGGGCACTGAGTGGCTGCTGGAGCTGCTGATGGAAGTACAACTGCAGCAGTACTTCCTGCGCATCCGTGATGAGCTCAACGTTACACGTCTCTCACACTTTGACTATGTGAAGAATGAGGACCTGGAGAAGATCGGTATGGGCCGGCCCGGAACTGTTTGCAAAAATAGATTTGAAATTAGAAGTCAAAAGTGTTTAAGTGAATTTTCTGTATTAAACTCTATTTACAGCATCTGTGGCATGATATTGATTACGGAGGATGGTTTGATTCATCCGGCAAAGACGGCTGTGGGAGGTGGTGAAGAGGAGAAAAACCATGTGCAAGCGCAAGTCTTGGATGAGCAAGCCTCTGGCTTCCCTCAGCCCACACCCTGGTTCAGCTCTCCTCGGCCGACCCACAGGCTCCTCATACAAAGTGCCTCGAGAGCTGATAAGCAGTTAGAAAGATTAGCTCTGTCTAGAATCGCCGTCTCTCTTGTTGTGATTTCTACTGCTGTCATTCATTTTGGGATGTTCCATGTTAGCGGTTATCATTACTGCAATGGAATAGAGACTAGCCAGGGAGTCCTCAAGTTTCTGGTGTTCAGTGGCAAGAGACCAGAAGGAGACTTCAATCCCCAACCAGCCAGTACTTTCCGAAAACCCTCCCCCACACCTCCACTGGTGGACGGCCAGCAGCAGACCCTCACCTGTCTCATCAGCGAGAAAGACCTTGCCCTCTTTGAGAAACTGGGCGACGGCTCCTTCGGCGTGGTCAAGCGTGGAGAGTGGTTCACGCCAAATGGAAAAGTGCTCAATGTAGCAGTGAAGTGTCTGAAGACAGACGTGCTCAACCAGCCAGATGCTCTGGACGACTTCATCTGTGAGGTCAATGCCATGCACTCTCTCGACCACCAGAACCTCATCCGTCTCTACGGAGTCGTCCTCACACACCCCATGAAGATGGTGACTGAGCTTGCACCTCTTGGCTCCATGCTGGATCGTTTGCGAAAGACCATGGGCCATTTCCTCATTTCCACCTTGTGTCAGTACACCATCCAGATATCCAATGGCATGGCTTACCTAGAGTCCAAACGCTTCATCCACAGAGACCTGGCCGCCAGAAACATCCTGCTGGCTTCCAGTGAGCAGATCAAAATCGGAGACTTTGGTCTGATGAGGGCACTGCCTAAGAACGATGACCATTACGTCATGCAAGAGCATCGCAAAGTCCCTTTCGCCTGGTGTGCCCCAGAGAGCCTGAAGACACGCACATTTTCTCATGCCACAGACACATGGATGTTTGGTGTGACACTGTGGGAAATGTTTACCTACGGTCAGGAGCCCTGGCTGGGCCTAAATGGTAGTCAGATCCTCCACAAAATAGATAAGGAGGGTGAAAGGCTACCTAAACCAGAGGACTGTCCTCAGGACATCTATAATGTCATGATGCAGTGTTGGGCTCAAAAACCAGATGACAGGCCCACCTTTGTGGCTCTAAGGGAATTTCTAGTGGAAACCATGCCTACAGATATGAGGGCCCTGCAGGACTTTGATGAACCTGACAAGCTTCAAATCCAGATGAATGATGTCATTACCATCATAGAGGGCAGGGCAGAGCACTACTGGTGGAGAGGTCAGAACAAGCGTACCCTGAAGGTTGGTCAGTTTCCCAGGAACACCGTCACGTCAGTTGCAGGTCTCTCTGCCCATGACATAAGCCGTCCACTGAAGAACAGCTTCATTCACACAGGCCATGGAGACACTAATCCTCACCGCTGCTGGGGCTTTCCTGACAGGATCGATGATCTTTATCTCGGGAATCCCATGGATCCTCCAGATGTGCTAGGGCTGGATTTCAACTCTGCCAGACCAACTCAACTCCCTGGACGTGCTAAGAAGGAGCCTCCCCCTCGGCCCCCTCAGCCATCTTTGCTGGTTAAGAGTAAGTGTGGACCCTTAGTTCAGTTTAAGCACTGCTCATGCCCCCTCTGTTCACTGCTAGCACCCCTCCTCAAAGAACCCTGCTATGATGCTGTTGCTGAGGATGAGGACCAAACTTCATCAGGTCTTCGGCGACTCTCTTTGAAGAAGAAGGGCCTTAAGCTCAAACCAGCCGCCTGGGTCTCTGCTACCAAATTAGGTGATCGTTCCACATATGGTGTGCGGACTCCAGGAGGCAGCACTCCCACAGAAGTCTCTCTCATAGACTTTGGAGAAGAGTTTCCATCGGCCACACCTTCACCCTCTCCTGTGATGGAAATCCAGATCCCAACCCTTGCTAAACTGGCACTTGAAGCAGAGAACATTTTGGACAAAACTCCTCCTCAGAGCCCCTCACGCTCTCTACCCCGACCCCTTCACCCTACCCCAGTGGTGGACTGGGACGCCCGGCCCCTTCCTCCACCCCCAGCCTATGATGATGTAGCACAAGATGAGGATGACTTTGAAGTGAGCTCTATCAACAGTGTGGAACGAGGAGCTGATGAACCATGCTCTCCAAGTATACCCTGCACTCCTACAGGAGAGTGCAAACCTCATGTAGAAGATAATTTATTTTTGCCCAACAGGCAGAGTAAAGCCTGCACCTACTCACAGTCTGCTGAGATCTTCCAAGAGCTGCAGCAGGAGTGTATGAGGCACCTCAATGTACCTGTGAGCTCTACCAGCCCTGGTCTGGAGCCACACCGCCAGATTGTCCTAACATTTTCTGAAGACAAACCCCAGATACCACCACGCATCCCCATACCACCCCGTCCAGTCAAACGTGCAGGTGGCGATTATGCCCGCTGGTCTGGTGAGTTGTCCCCAGTCTCAGGAATTGAGGATAAGGAGCGTCCACCCCAGATTCCCCCACGAGACCCCCTCTCTCAGCCAGGCTCACGCACACCAAGTCCACATGTGGGCTCCCCTCAGACTCGCAGCAGCCTTTGCTCAGCCGCCTCCATCTACGGCCCATCCTACCTCTCCACCTCACCTGCTAAACTCATGCCAACCACTCAGAGCTTTGCCTCCGATCCCAAATATGCTGCTCCCAAAGTCATCCAGGCACAGGGCAAAGATAAGGAGCAAGCCAAAGGGCCCTGCATTCTGCCTATTGTACGTGACGGCAAGAAGGTCAGCAACACGCACTACTACCTCCTGCCTGAGAGGCCTCCGTATCTGGACCGATACGATAAGTTCTTCAAAGAGGCAGAGAGCGGTGAGGAGAAGAAGCAGATAAACACAGCGACAGTTAAGCCCATGGTTCATCAACAAGGGGAGCTCAAGTCCAATTTCTCCTCCAATAACAACAGCAGTCTGACGGGCTCTGGATTTAGAGGTGGGCTGAAGAACTCTCTCGGCCTGTGCCGAGTAAGCTCTGATGGCTCATTTAACAGGGCTGACAGCACCAACAACCATGACAGAGTCAGACTGGTGCAGGAGGCTGTACATGGAGTAACAATTGAAGAATGTCAGGCGGCTTTACAGAATCACAGCTGGAATGTGCAGAAGGCTGTACACTACTTGAAGGTTGAGCAGCTCTTCTGTCTAGGGCTAAAGACGAGGGTAGAGTGTCATAAGATTCTAGAGATGTATGACTGGAATCTGGAGTTAGCCAGTACACAACTGTTGGACTCCTATGGCTCGGTCAAGCTGAGGTAATCTTTTTCTTTTGTTGTTCTGTGCTTCCCCCTACTGGTAA

Function

symbol description
tnk2 Enables several functions, including epidermal growth factor receptor binding activity; protein kinase activity; and ubiquitin protein ligase binding activity. Involved in phosphorylation; positive regulation of peptidyl-tyrosine phosphorylation; and regulation of clathrin-dependent endocytosis. Located in several cellular components, including clathrin-coated pit; clathrin-coated vesicle; and cytoophidium. Part of Grb2-EGFR complex.

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process

KEGG:

id description
K08886 TNK2, ACK1; activated CDC42 kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00842413_00868623.mRNA True 3691 mRNA 0.52 15 842413 868663
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Neighbor

gene id symbol gene type direction distance location
CI01000003_00747650_00802075 NA coding upstream 39732 746547 ~ 802681 (+)
CI01000003_00731635_00742538 TFR1A coding upstream 99804 731200 ~ 742609 (+)
CI01000003_00665762_00716862 DLG1, DLG1L coding upstream 125034 664961 ~ 717379 (+)
CI01000003_00644619_00663181 NA coding upstream 179133 643655 ~ 663280 (+)
CI01000003_00596144_00607951 NA coding upstream 234375 596144 ~ 608038 (+)
CI01000003_00981851_01059504 TMTOPSA coding downstream 113188 981851 ~ 1059504 (+)
CI01000003_01126525_01129929 ADIPOQB coding downstream 257435 1126098 ~ 1130325 (+)
CI01000003_01140472_01168860 NA coding downstream 271679 1140342 ~ 1168900 (+)
CI01000003_01258265_01259530 NA coding downstream 389602 1258265 ~ 1259551 (+)
CI01000003_01280201_01309764 NA coding downstream 411104 1279767 ~ 1310125 (+)
G22574 NA non-coding upstream 22873 817798 ~ 819540 (+)
G22583 NA non-coding upstream 97475 744681 ~ 744938 (+)
G22585 NA non-coding upstream 260008 582068 ~ 582405 (+)
G22551 NA non-coding upstream 280801 560920 ~ 561612 (+)
G22544 NA non-coding upstream 319760 522149 ~ 522653 (+)
G22601 NA non-coding downstream 10968 879631 ~ 879868 (+)
G22602 NA non-coding downstream 11290 879953 ~ 880262 (+)
G22603 NA non-coding downstream 11958 880621 ~ 880871 (+)
G22605 NA non-coding downstream 13942 882605 ~ 882932 (+)
G22615 NA non-coding downstream 27458 896121 ~ 896329 (+)
CI01000003_00390997_00406970 WDR33 other upstream 447199 390622 ~ 408312 (+)
G22420 NA other upstream 652974 179531 ~ 189439 (+)
G22578 NA other downstream 56140 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 994605 1862854 ~ 1868137 (+)
G23870 NA other downstream 1411997 2280660 ~ 2285641 (+)

Expression

CI01000003_00842413_00868623(TNK2) Expression in PRJCA010000

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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CI01000003_00842413_00868623(TNK2) Expression in each Bioproject

Bar chart with 44 bars.
CI01000003_00842413_00868623(TNK2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009103 NA coding CM030126.1 CM030126.1 25350519 ~ 25368414 (-)