CI01000003_01140472_01168860


Basic Information

Item Value
gene id CI01000003_01140472_01168860
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1140342 ~ 1168900 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01140472_01168860.mRNA
GCTTATATCTCACAGATCCATCATCCTCAACCAATTAGAGTGCTTGGGGCTCAGGGTCAATTTTCCCAAGAGCTCATTATCTCGCAGCCAACGTGTCTCGTTCCTGGTAATAATTTTAGACTTGACCCGCATGAGGGTCTCGCCAGAACGATCTCTGGCCATTCAGCAGCTCGTGGAAACCTTTACGCCCGGGGCTTCTCGGCTGCTCAGAGCATTTCAGAAGATGCTAGGTCTAATGAGCTCAGCATTTAGCGCTGCAGTTCTGGCTGAAGCCACGAGTCCCGTCCCAAGCCTGGCGACATGGTCGCTGCTTGCTCAAGGTGAACCAGGCATGCGTCGCAACCCTGGCCCCTTGGAAGACCCCCTGCTGGTTCAAGCAGGGCGTGGCAATTGGAACAATGAACAGGAGGAAGGTCGTCTTCACAGATGCCTCCAAGATGGGTTGGGGAGCTCTGAGCGACAACCATCCAACCTTCGGCACTTGGAACGGCCCGGAAAGCAAGCTTCATATCAACCGTCTGGAAATGATGACAGTATATCAAGCTCTCCAAGCCTTCCTTCCTCTCCTGGTGGGACACCACGTCTTGGTCAGATCAGACAACATGACGGTGGTGTCCTTCATAAATCACCAGGGCGGGCTCTCTTCAAAGCCCCTCTTCACTCTAACGAAGACCATCCTAGAGACAGGTTCAGCACCAGTTCAGAGGAACCTCCCAATCTCAAACCAGACAAAGCAAACCATTCTCGCAGCACTTACAGTAACCACATCCTTGACCCAACAGGAATCTCTTTCAGAACAGTGTGGGAGTGGTTGGAGAAGTGGAAAGGGGGGTGGGAAAAAAAGCTGAAAATTAAAGATCTGTTAGTTCATGGTGTTTATGAGGTCTGCTCGGAGATCCTCTCCAGGGTATTTAGTTCACTTACAACTCCAGTGTGGCTGAAGAATGTCAACATTGTGCTCAGAGAAATGCAAGGAAGAAACGGGTCACAAACCAGTAACAATCCAAACAAAAGATATCAAATTATACCACCGACCATGAGATACTTTATGAAAGAACGCAGCTCATTTGTGAGGGGTCCAATATTCTGGCATCTCTTGCTTTGGCAGGGCATAGTTGCAGGCCAGATGCTTAGATATGGTCACTCATTTGACCTGATCAGCAGCCTGGAGAGCATCTACCCAGCTCTGACTCCTGCCCGCTCACCTCAGGGCTGCCTGTGTGCTGGTATTGAAGTGGAAGTCCTGACATACTTTAAAGTAATGTGCGCTCAGGAGGGGCTTGAAGAAAAGATAAGCCACATTACACCAATCAGACACAGCGTTACTGGACACCGCACCACCCCTACCCATTTTAACTGGCACCTTGGGGTCCACAGATGTTCCCTTATAATGATTTTTTTACCCATTAGCTTAATAGTTGTTTATGGCTGTGAAACACAGGAATGTGGCCGTCTCATGAAGAAGAGGTGAAATAATGAGGGATATGGGGAACTGGCCGCAAGGTACTGAA

Function

NR:

description
reverse transcriptase/ribonuclease H/putative methyltransferase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01140472_01168860.mRNA True 1511 mRNA 0.49 6 1140342 1168900
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000003_01126525_01129929 ADIPOQB coding upstream 10017 1126098 ~ 1130325 (+)
CI01000003_00981851_01059504 TMTOPSA coding upstream 80838 981851 ~ 1059504 (+)
CI01000003_00842413_00868623 TNK2 coding upstream 271679 842413 ~ 868663 (+)
CI01000003_00747650_00802075 NA coding upstream 337661 746547 ~ 802681 (+)
CI01000003_00731635_00742538 TFR1A coding upstream 397733 731200 ~ 742609 (+)
CI01000003_01258265_01259530 NA coding downstream 89365 1258265 ~ 1259551 (+)
CI01000003_01280201_01309764 NA coding downstream 110867 1279767 ~ 1310125 (+)
CI01000003_01329453_01342093 NA coding downstream 160553 1329453 ~ 1342672 (+)
CI01000003_01356590_01360272 NA coding downstream 187577 1356477 ~ 1360348 (+)
CI01000003_01382733_01410162 MIB1 coding downstream 213548 1382448 ~ 1410190 (+)
G23039 NA non-coding upstream 69834 1070290 ~ 1070508 (+)
G22641 NA non-coding upstream 211195 928942 ~ 929147 (+)
G22625 NA non-coding upstream 226548 913534 ~ 913794 (+)
G22615 NA non-coding upstream 244013 896121 ~ 896329 (+)
G22605 NA non-coding upstream 257410 882605 ~ 882932 (+)
G23056 NA non-coding downstream 7930 1176830 ~ 1222662 (+)
G23175 NA non-coding downstream 158663 1327563 ~ 1327875 (+)
G23217 NA non-coding downstream 176373 1345273 ~ 1345574 (+)
G23223 NA non-coding downstream 209159 1378059 ~ 1378355 (+)
G23242 NA non-coding downstream 317282 1486182 ~ 1486398 (+)
G22578 NA other upstream 215094 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 745128 390622 ~ 408312 (+)
G22420 NA other upstream 950903 179531 ~ 189439 (+)
CI01000003_01863421_01867859 NA other downstream 694368 1862854 ~ 1868137 (+)
G23870 NA other downstream 1111760 2280660 ~ 2285641 (+)

Expression

CI01000003_01140472_01168860 Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.1.
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CI01000003_01140472_01168860 Expression in each Bioproject

Bar chart with 37 bars.
CI01000003_01140472_01168860 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
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Co-expression Network